PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G245000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARF
Protein Properties Length: 705aa    MW: 77848.7 Da    PI: 6.2482
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G245000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.36.2e-23128228198
                          EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          f+k+lt sd++++g +++ +k+a+++     +++ + +++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   
  Manes.01G245000.1.p 128 FCKILTASDTSTHGGFSVLRKHATDClppldMNQATPTQELAAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL-- 215
                          99****************************9555556679************************************************.. PP

                          SSSEE..EEEEE- CS
                   B3  86 grsefelvvkvfr 98 
                          + +++el+v+v+r
  Manes.01G245000.1.p 216 RGDNGELRVGVRR 228
                          3489999****98 PP
2Auxin_resp99.74.1e-33254333183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a+ha++t++ F v+Y+Pr+  s+F++ ++k+++a+++ +svGmR+km+fe+eds+er+++Gt+vgv d++  +W++SkWrsLk
  Manes.01G245000.1.p 254 ASHAVTTQTLFVVYYKPRT--SQFIIGLNKYLEAVNHGFSVGMRYKMRFEGEDSPERSFTGTIVGVGDVSA-QWSGSKWRSLK 333
                          689***************6..9**********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.05E-41117257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-39122242IPR015300DNA-binding pseudobarrel domain
CDDcd100179.72E-20126228No hitNo description
PfamPF023625.2E-21128228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.026128230IPR003340B3 DNA binding domain
SMARTSM010193.4E-21128230IPR003340B3 DNA binding domain
PfamPF065075.9E-31254333IPR010525Auxin response factor
PfamPF023098.0E-13557677IPR033389AUX/IAA domain
SuperFamilySSF542774.9E-12586665No hitNo description
PROSITE profilePS5174525.774589681IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MAHVETNFGS DSLSRDERGG DDLYTELWKA CAGPLVDVPV PGERVFYFPQ GHMEQLEAST  60
NQELTQQIPR FNLPSKILCR VVNIQLLAEQ ETDEVYAQIT LHPEPNQEEP TSPDSRLPEP  120
KKPTVHSFCK ILTASDTSTH GGFSVLRKHA TDCLPPLDMN QATPTQELAA KDLHGYEWRF  180
KHIFRGQPRR HLLTTGWSTF VTSKRLVAGD AFVFLRGDNG ELRVGVRRLA RQQSLMPSSV  240
ISRQSMHLGV LATASHAVTT QTLFVVYYKP RTSQFIIGLN KYLEAVNHGF SVGMRYKMRF  300
EGEDSPERSF TGTIVGVGDV SAQWSGSKWR SLKIQWDEPA TIQRPERVSP WDIEPFAASA  360
SINLPPTVLK SKRPRPLDTP VSEITTNSTT SPFWYRGSAQ SHDLSQLGSA AEAQSCEKSQ  420
VVWSVRQKEI DSSVVNGSIF CNSRVRTEGI WPPSPHMNVS LSLFFDSADN SRTITQSVAS  480
GYVSPVPLRQ TDVLMHDQVE KGKKYENSIG CRLFGIDLTS NSNAAPPLEE ALCTTVDPNG  540
TGGPLAAPGD SDKAQNMDAS KSSEEQKQIA SDALPKETHG KLGPTSSTRS RTKVQMQGVA  600
VGRAVDLTVL KGYGDLIKAL EEMFEIKGEL STPDKWAVVF TDDEGDMMLV GDDPWPEFCK  660
MVKKILIYSS EEVKKMSTRS KLHASSLEDE GTIASLDSEH KSET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1762135617355Auxin response factor 1
4ldw_A1e-1762135617355Auxin response factor 1
4ldw_B1e-1762135617355Auxin response factor 1
4ldx_A1e-1762135617355Auxin response factor 1
4ldx_B1e-1762135617355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371375KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G245000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611599.10.0auxin response factor 9-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A2C9WNV10.0A0A2C9WNV1_MANES; Auxin response factor
STRINGcassava4.1_002408m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9