PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G242300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 242aa MW: 27428.4 Da PI: 4.4641 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.4 | 1.3e-19 | 31 | 85 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++++f++eq++ Le++Fe+++ + +++ +LAk+lgL+ rqV +WFqN+Ra++k Manes.01G242300.1.p 31 RNKRRFSDEQIKSLESMFESESRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 85 67889*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.4 | 9.6e-39 | 32 | 123 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +krr+s+eq+k+LE++Fe+e++Lep++K +la+eLglqprqva+WFqn+RAR+k+kq+E+dy+ L ++y++l+++ e+L+ke+++L+++l Manes.01G242300.1.p 32 NKRRFSDEQIKSLESMFESESRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQIERDYSILLANYNSLASRFETLKKEKQALATQL 121 79***************************************************************************************9 PP HD-ZIP_I/II 92 ke 93 ++ Manes.01G242300.1.p 122 QK 123 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.85E-20 | 10 | 88 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.0E-20 | 20 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.706 | 27 | 87 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-17 | 29 | 91 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.4E-17 | 31 | 85 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.05E-15 | 36 | 88 | No hit | No description |
PRINTS | PR00031 | 8.8E-6 | 58 | 67 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 62 | 85 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.8E-6 | 67 | 83 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.1E-14 | 87 | 129 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MMFDEAEYSP STEDPYSSID TLNTTRKKKN RNKRRFSDEQ IKSLESMFES ESRLEPRKKL 60 QLAKELGLQP RQVAIWFQNK RARWKSKQIE RDYSILLANY NSLASRFETL KKEKQALATQ 120 LQKLNDLLQK PREEGECSGE AAAVNSSEGE SENGDAAKCD SEAKCSLSLI ETSSNGLGVL 180 SDEDSSIKVE YFGLEEEPNL MRMMEPGDGS LTTSQEDWGS LDSDGLFDQS NSGCQWWDFW 240 V* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00320 | DAP | Transfer from AT2G46680 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G242300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021611387.1 | 1e-176 | homeobox-leucine zipper protein ATHB-12-like isoform X1 | ||||
Swissprot | P46897 | 2e-70 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A2C9WR28 | 1e-175 | A0A2C9WR28_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_014981m | 1e-176 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5635 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 6e-68 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G242300.1.p |
Publications ? help Back to Top | |||
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