PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G241700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 493aa    MW: 54849.8 Da    PI: 4.9486
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G241700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.8e-13319364454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YIk+L
  Manes.01G241700.1.p 319 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYIKEL 364
                          799***********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.4E-5329215IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474596.67E-18313378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.371315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.18E-14318369No hitNo description
PfamPF000102.3E-10319364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-17319379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-16321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00846437492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MEELIISSSS SSSSSSSLVP SSQETPTTLH QRLQSMLQSQ PDWWAYAIFW QTSNDETART  60
FLAWGDGHFQ GTRDTSPTLT TINNRLQHRI PTFNFESKRS VKGIQALIGE NLDIDVSMMD  120
DNDVPDVEWF YVMSLTRSFL AGEGIPGKAL STGSLVWLTG AQELQFYNCE RAKEARMHGL  180
QTLVCIPTFN GVLELGSSDM IRENWGLVQQ VKSLFGSDLA DLMPKNPNPT TVPVQLLDMN  240
ISFADIGIIA GIKGDDDALE ERFAQELEAK KESAKAGLPY VHSEHSDSDC PFLAPMTINK  300
RAPKKRGRKP GQGRDTPLNH VEAERQRREK LNHRFYALRA VVPNVSRMDK ASLLSDAVSY  360
IKELKAKIEE LESQLKRENS KRVKLEGTDN TDNQSTTTTV DQAGPNTDGS EFQLEIDVKI  420
LGNDAMIRVQ SENVNNPGAR LLGALRDLEL HVHHASMSTV NELMLQDVMV RLASGFTTEE  480
ELKSTLLQIL EE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-37282158192Transcription factor MYC3
4rqw_B3e-37282158192Transcription factor MYC3
4rs9_A3e-37282158192Transcription factor MYC3
4yz6_A3e-37282158192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G241700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616577.10.0transcription factor MYC2-like
TrEMBLA0A2C9WPZ20.0A0A2C9WPZ2_MANES; Uncharacterized protein
STRINGcassava4.1_006932m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.13e-71NACL-inducible gene 1