PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.01G239000.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 757aa MW: 83717.1 Da PI: 6.2856 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.6e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Manes.01G239000.2.p 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.13E-17 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.091 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 8.3E-17 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.3E-13 | 23 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-8 | 24 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.1E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.46E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 757 aa Download sequence Send to blast |
MDIYSSGEDL VIKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFS KLEKEAVAKG VPIRQALDID IPPPRPKRKP SNPYPRKTGV CRTPLQVALK 120 DRELSDSVSL PHYKQALDLE KEPLPEKPDE DEKQTNSKEN QEDNCSEVFT LLPEIHCPSV 180 CSANKNSVPT TEALRNSCSF REFVPTLKEV VNQDGNNESY VTIELQGNQK LDKSDVKQTV 240 QDNGTNRAAK LESCPFHEKL VQGKNSNEFN NALPIDEMEA MQNYPRHVPV HVLDGSLGTC 300 VQTPPSDVSF QESIRQPAEV HGHPNLYSNQ APSTTTEHQS NGPRSSTHQL LQTYPPPFTP 360 THHNQDDFRS FLHISSTFSS LIASTLLQNP AAHAAASFAA TFWPYPNVET SADSPPCAQG 420 GFPSRQMHSA PSMAAIAAAT VAAATAWWAA HGVLPLCAPL HSAFTCSPPA TAVPSVDADQ 480 VPAAKTECKE TTLKNPPLED QQLDLEHSEA LQAQNSASKE SGCTKQNSVS KATDREMTVT 540 APEIDELGKL KNRKQVDRSS CGSNTSSSSE VETDALEKLE KDKEESKEAD TNHLVTEFSN 600 RRSRSSSNLS DLWKEVSEEG RMAFQALFSR EVLPQSFSPP HDLKNEAHQK VNVEDEQRTD 660 GKDGAALLLN LNSKTWGCCN SNHESDISLL PRCEYSGEDG LLTIGLGHGK LKARRTGFKP 720 YKRCSVEAKE NRVVTASSQG EEKSPKRIRM EGEASV* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.01G239000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021611101.1 | 0.0 | protein LHY-like isoform X2 | ||||
TrEMBL | A0A251LUQ0 | 0.0 | A0A251LUQ0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_027920m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01060.3 | 1e-103 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.01G239000.2.p |