PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G226200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 403aa    MW: 45626.9 Da    PI: 4.5792
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G226200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +grWT+eEde+l ++++  G g+W++ ++  g+ R++k+c++rw +yl
  Manes.01G226200.1.p 14 KGRWTAEEDEKLMKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                         79******************************99************97 PP

2Myb_DNA-binding47.25e-1567112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ + +E+e++ ++++ lG++ W++Ia +++ gRt++++k++w+++l
  Manes.01G226200.1.p  67 RGNISSDEEEIIFKLHASLGNR-WSLIACHLP-GRTDNEIKNYWNSHL 112
                          78999*****************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.92961IPR017930Myb domain
SuperFamilySSF466892.66E-2711108IPR009057Homeodomain-like
SMARTSM007171.1E-111363IPR001005SANT/Myb domain
PfamPF002491.0E-141461IPR001005SANT/Myb domain
CDDcd001672.73E-81661No hitNo description
PROSITE profilePS5129423.41362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2365116IPR009057Homeodomain-like
SMARTSM007176.2E-1466114IPR001005SANT/Myb domain
PfamPF002497.1E-1367112IPR001005SANT/Myb domain
CDDcd001677.01E-971112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MGRAPCCEKV GLRKGRWTAE EDEKLMKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRTDLKRGNI SSDEEEIIFK LHASLGNRWS LIACHLPGRT DNEIKNYWNS HLSRKVHIFR  120
KPGNENRQLV IDTANLGTRT GTSKRGKTPG RSCAVKNNNK SQLHKQPASL TNETDEYSTG  180
FSKDDGIIPM PQTPVLEKET LPVASEDMTI LDLDQCVEDE DKEQMDLVIP CPCRETAEGN  240
REGLVLNSSE EKESQLVSCG DEKESEMLGP CRWFDGEMLL FDDIIQNELL DDEGALNEGR  300
EDDFSLIRLE GEKKITGRNE DHGKQIVETG NPNNSRDELY RCSSIGSCSD EWSWENLVQW  360
DENVDNMVTC FWEGDNLGEG ENQKLQEMDN AKQNAFVAWL LS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-25121162105MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G226200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621134.10.0myb-related protein 330-like
TrEMBLA0A2C9WNB30.0A0A2C9WNB3_MANES; Uncharacterized protein
STRINGcassava4.1_008985m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.15e-73myb domain protein 111