PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G226200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 403aa MW: 45626.9 Da PI: 4.5792 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.8e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEde+l ++++ G g+W++ ++ g+ R++k+c++rw +yl Manes.01G226200.1.p 14 KGRWTAEEDEKLMKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 47.2 | 5e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E+e++ ++++ lG++ W++Ia +++ gRt++++k++w+++l Manes.01G226200.1.p 67 RGNISSDEEEIIFKLHASLGNR-WSLIACHLP-GRTDNEIKNYWNSHL 112 78999*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.92 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.66E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.73E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.413 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-13 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.01E-9 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MGRAPCCEKV GLRKGRWTAE EDEKLMKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRTDLKRGNI SSDEEEIIFK LHASLGNRWS LIACHLPGRT DNEIKNYWNS HLSRKVHIFR 120 KPGNENRQLV IDTANLGTRT GTSKRGKTPG RSCAVKNNNK SQLHKQPASL TNETDEYSTG 180 FSKDDGIIPM PQTPVLEKET LPVASEDMTI LDLDQCVEDE DKEQMDLVIP CPCRETAEGN 240 REGLVLNSSE EKESQLVSCG DEKESEMLGP CRWFDGEMLL FDDIIQNELL DDEGALNEGR 300 EDDFSLIRLE GEKKITGRNE DHGKQIVETG NPNNSRDELY RCSSIGSCSD EWSWENLVQW 360 DENVDNMVTC FWEGDNLGEG ENQKLQEMDN AKQNAFVAWL LS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 9e-25 | 12 | 116 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 1e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00627 | PBM | Transfer from PK06182.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G226200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021621134.1 | 0.0 | myb-related protein 330-like | ||||
TrEMBL | A0A2C9WNB3 | 0.0 | A0A2C9WNB3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_008985m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 5e-73 | myb domain protein 111 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G226200.1.p |