PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 758aa MW: 85947 Da PI: 6.6655

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.01G225200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.5	1.4e-20	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHn 86 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w++t +++ Hn Manes.01G225200.1.p 59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQIKASDDGKMQRNRKSSRCGCQAYMRIVKKAdfdVPEWRITGFSNIHN 148 6*************999887455667****************9***************98877677789******* PP FAR1 87 Hela 90 Hel Manes.01G225200.1.p 149 HELL 152 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-17	59	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.0E-24	275	366	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.409	538	586	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.7E-7	559	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-6	561	588	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 758 aa Download sequence Send to blast
MSKLTDLVKE TSESGMDSCA DDIGTVEEIA EDTILSRQTS VNLVPFIGQR FVSQDAAYEF 60 YCSFAKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QIKASDDGKM QRNRKSSRCG 120 CQAYMRIVKK ADFDVPEWRI TGFSNIHNHE LLKSNEVQLL PAHSTMSADD KSRICMYAKA 180 GMSVRQMLRL MELEKGVKLG CLPFTEMDVR NLLQSFRNVN RDNDAINLLQ MCKYKKDKDP 240 NFKYNFQIDA NNRLERIAWS YALSIQSYEA FGDAVIFDTT HRLDAYDMIM GIWIGVDNHG 300 SNCFFGCVLL RDENMESFSW ALKTFLEFVD GKAPETILTD QNIWLKEAVA VEMPRTKHAF 360 CIWHIIAKFS DWFSILLGSQ YDKWKAEFHR LYNLQSVEDF EVGWGEMVDT YGLHGNKHIV 420 SLYALRTFWA LPFLRCYFFA GMTSTFQSDS INAFIQRILS AQSLDNFVEK VAVAVGYKED 480 AGPKQKVPRK VHKISLKTGS PIESHAATVL TPYAFGKLQE ELVLAPQYAS LMVDESYFIV 540 RHHIDMDGGC KVLWIPHDEF ISCSCHLFEF SGILCRHVLR VLSTNNCFHI PDRYLPVRWR 600 DVGTSLTKPF PAFTSDEHAG KVQLLQSMVS TLIAESMGTE ERLDVACDQV AHVLSSIKEF 660 PGPAHDDNDI TYTSPSDSLI LPEVEDSVGF VQSFAAGSTH DPMTLGKMKE RRLRDGININ 720 RKRRRCSLPC CGQFGHDATD CPMMGSDDLN EDGLGFI*

Sequence ? help Back to Top

Protein Sequence Length: 758 aa Download sequence Send to blast

MSKLTDLVKE TSESGMDSCA DDIGTVEEIA EDTILSRQTS VNLVPFIGQR FVSQDAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QIKASDDGKM QRNRKSSRCG  120
CQAYMRIVKK ADFDVPEWRI TGFSNIHNHE LLKSNEVQLL PAHSTMSADD KSRICMYAKA  180
GMSVRQMLRL MELEKGVKLG CLPFTEMDVR NLLQSFRNVN RDNDAINLLQ MCKYKKDKDP  240
NFKYNFQIDA NNRLERIAWS YALSIQSYEA FGDAVIFDTT HRLDAYDMIM GIWIGVDNHG  300
SNCFFGCVLL RDENMESFSW ALKTFLEFVD GKAPETILTD QNIWLKEAVA VEMPRTKHAF  360
CIWHIIAKFS DWFSILLGSQ YDKWKAEFHR LYNLQSVEDF EVGWGEMVDT YGLHGNKHIV  420
SLYALRTFWA LPFLRCYFFA GMTSTFQSDS INAFIQRILS AQSLDNFVEK VAVAVGYKED  480
AGPKQKVPRK VHKISLKTGS PIESHAATVL TPYAFGKLQE ELVLAPQYAS LMVDESYFIV  540
RHHIDMDGGC KVLWIPHDEF ISCSCHLFEF SGILCRHVLR VLSTNNCFHI PDRYLPVRWR  600
DVGTSLTKPF PAFTSDEHAG KVQLLQSMVS TLIAESMGTE ERLDVACDQV AHVLSSIKEF  660
PGPAHDDNDI TYTSPSDSLI LPEVEDSVGF VQSFAAGSTH DPMTLGKMKE RRLRDGININ  720
RKRRRCSLPC CGQFGHDATD CPMMGSDDLN EDGLGFI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	720	724	RKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.01G225200.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021609593.1	0.0	protein FAR1-RELATED SEQUENCE 11-like isoform X1
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2C9WPN2	0.0	A0A2C9WPN2_MANES; Uncharacterized protein
STRING	cassava4.1_002350m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Manes.01G225200.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]