PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G224400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | GATA | ||||||||
Protein Properties | Length: 136aa MW: 14994.5 Da PI: 10.3088 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.2 | 2.2e-18 | 31 | 65 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C C+tt Tp+WR+gp g+ktLCnaCG++yrkk++ Manes.01G224400.1.p 31 CIDCHTTRTPCWRSGPAGPKTLCNACGIRYRKKKR 65 889*****************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.6E-13 | 25 | 83 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.57E-14 | 25 | 66 | No hit | No description |
PROSITE profile | PS50114 | 12.202 | 25 | 79 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.3E-15 | 25 | 81 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.65E-14 | 30 | 81 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 31 | 56 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.9E-16 | 31 | 65 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MMIMDLKTNG QESDDMQNTP PSRSSELKKS CIDCHTTRTP CWRSGPAGPK TLCNACGIRY 60 RKKKRNLLGL DKGRAEKSRR KIAKSSRSEL GVPLKLGLMV AGREALLQEE WKRKLGEEEQ 120 AAILLMALSC GFVSA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G224400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021629041.1 | 8e-95 | GATA transcription factor 16-like | ||||
TrEMBL | A0A2C9WN50 | 2e-93 | A0A2C9WN50_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_019027m | 9e-92 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1569 | 32 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 2e-28 | GATA transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G224400.1.p |