PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G208400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 691aa    MW: 77554.5 Da    PI: 5.0479
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G208400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.2e-14482528455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Manes.01G208400.1.p 482 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 528
                          7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-569191IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625478527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-19480546IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11482527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-19482544IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-14482532No hitNo description
SMARTSM003531.2E-17484533IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MAAPPNSRLQ SMLQAAVQSV QWTYSLFWQV CPHQGILVWG DGYYNGAIKT RKTVQPMEVS  60
AEEASLQRSQ QLRELYESLS AGETNQPVRR PSAALSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGKAYARRQ HVWLTGANEV DSKTFSRAIL AKSARIQTVL CIPLLDGVVE LGTTEKVQED  180
LGFVQRVKGF FTDHHHPPLP PPPKPALSEH STSNPTTSSD QPHFQSPIPS TYGVTDPTTN  240
DKQDDDEEEE EEEEEEDEDE DDEDQEGSDS EAETGRNTRS IATLVQNAET VTTAEPSELM  300
QLEMSEDIRF GSPDDGSNNL ESDLRLIGSG NLADHQSRGD SFRVESAGRW AMGQDPSSNN  360
LQAAHAAGPP PLQEVPQEDT HYSQTVSAIL QGERMRWAES SAAAYLSYSN QSAFIKWTNR  420
CSDHVLHFTV EGTSQWFLKY ILFSVPYLHH KYREENSPRS RDGDSANRFR KGSSTQDELS  480
ANHVLAERRR REKLNERFII LRSLVPFVTK MDKASILGDT IEYVKQLRKK IQELEARNRH  540
MEIEQRSRLA EPPRRTSSLK EQRSAVTVLE KTKIGPGSDK RKLRIVEGSG GCMKPKTVER  600
SELEAETNIE VSIIECDALL EIQCEYKEGL LLDIMQMLRE LRIETTAVQS SLNNGVFAAE  660
LRAKVKDNVS GRKVSIVEVK RAIRKIIPHD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A1e-22918748227Transcription factor MYC3
4ywc_A1e-22918748227Transcription factor MYC3
4ywc_B1e-22918748227Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1486491ERRRRE
2487492RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G208400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021607958.10.0basic helix-loop-helix protein A-like
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A2C9WP340.0A0A2C9WP34_MANES; Uncharacterized protein
STRINGcassava4.1_002844m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-100bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]