PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G204200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | HSF | ||||||||
Protein Properties | Length: 352aa MW: 40148.9 Da PI: 4.8941 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.4 | 1.2e-34 | 43 | 134 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k++e+++d+ +++++sws+ g+sfvv+d++ f+ ++Lp+ Fkh+nf+SFvRQLn+YgFkk++ ++ weF+++ F +g+k Manes.01G204200.1.p 43 FLNKTFEMVDDPITNHVVSWSSGGSSFVVWDPHFFSASLLPRCFKHNNFSSFVRQLNTYGFKKIDPDR---------WEFANEGFLRGQK 123 9****************************************************************999.........************* PP XXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkks 102 +ll++ikr+k+ Manes.01G204200.1.p 124 HLLRNIKRRKT 134 *********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.8E-37 | 39 | 132 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 9.66E-35 | 39 | 132 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.2E-57 | 39 | 132 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.2E-18 | 43 | 66 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.6E-30 | 43 | 132 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.2E-18 | 81 | 93 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 82 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.2E-18 | 94 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MNPYYTVKEE YPGSSSPPSG DEQPITFLPQ PMEGLHDTGP PPFLNKTFEM VDDPITNHVV 60 SWSSGGSSFV VWDPHFFSAS LLPRCFKHNN FSSFVRQLNT YGFKKIDPDR WEFANEGFLR 120 GQKHLLRNIK RRKTPSQLLP QQQALGACVE VGRFGLDREI DRLKRDKQVL MMELVKLRHQ 180 QQNTRAHIQA MEQRLQCTEV KQQQMMQFLA RAVQNPAFLQ QLAQQKEERK ELEAMTKKRR 240 RPIDQGINTA ESSYGSGSRN PIKAEPVELG DYGFEVSELE ALALEMQGYG RARREEEEAE 300 AEEDIEPPES GDRELDEGFW DELLSESHGG GEDEDVDVLA ERFGFLGSSP K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-22 | 41 | 134 | 18 | 122 | Heat shock factor protein 1 |
5d5u_B | 1e-22 | 41 | 134 | 27 | 131 | Heat shock factor protein 1 |
5d5v_B | 1e-22 | 41 | 134 | 27 | 131 | Heat shock factor protein 1 |
5d5v_D | 1e-22 | 41 | 134 | 27 | 131 | Heat shock factor protein 1 |
5hdg_A | 9e-23 | 41 | 134 | 8 | 112 | Heat shock factor protein 1 |
5hdn_A | 9e-23 | 41 | 134 | 8 | 112 | Heat shock factor protein 1 |
5hdn_B | 9e-23 | 41 | 134 | 8 | 112 | Heat shock factor protein 1 |
5hdn_C | 9e-23 | 41 | 134 | 8 | 112 | Heat shock factor protein 1 |
5hdn_D | 9e-23 | 41 | 134 | 8 | 112 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G204200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021619858.1 | 0.0 | heat stress transcription factor A-6b-like | ||||
Swissprot | Q9LUH8 | 1e-123 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A251LTL4 | 0.0 | A0A251LTL4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_010803m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1100 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-110 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G204200.1.p |