PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G201900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 305aa    MW: 31976.2 Da    PI: 6.3729
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G201900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.27.9e-10153197554
                          HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Manes.01G201900.1.p 153 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 197
                          99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-15146207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-15150207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-7153197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MANNPTEPPA DDFLQEILGL PNFASGEAGL VGADAGLAVA AAAAQAPMML QLSSGDGSGH  60
ITTLGGAAGG GGAGFRGFPL GLSLDQGKGG FLKPEEASGS GKRFRDEVVD GRATTVKNVF  120
HSQPTPTTLA AAPHPPTMRP RVRARRGQAT DPHSIAERLR RERIAERIRA LQELVPSVNK  180
TDRAAMLDEI VDYVKFLRLQ VKVLSMSRLG GAGAVAPLVT DIPLSSVEDD TGEGGRNQPA  240
WEKWSNDGTE RQVAKLMEEN VGAAMQFLQS KALCIMPVSL ATAIYHTQPP DTAAIVKPES  300
NPQS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G201900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021607296.10.0transcription factor UNE12
SwissprotO227681e-133UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2C9WMX50.0A0A2C9WMX5_MANES; Uncharacterized protein
STRINGcassava4.1_012570m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-121bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]