PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G191500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 301aa    MW: 33973.8 Da    PI: 4.475
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G191500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-1876130357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          k++++t +q++ Le+ Fe ++++  e++ +LAk+lgL+ rqV +WFqNrRa+ k+
  Manes.01G191500.1.p  76 KKRRLTGSQVQFLERNFEVENKLEPERKIQLAKELGLQPRQVAIWFQNRRARFKN 130
                          56689***********************************************995 PP
2HD-ZIP_I/II126.31.4e-4076166292
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          kkrrl+  qv++LE++Fe e+kLeperK +la+eLglqprqva+WFqnrRAR+k+kqlEkdy+aLk++yd+lk++ ++L +e+e+L+ el
  Manes.01G191500.1.p  76 KKRRLTGSQVQFLERNFEVENKLEPERKIQLAKELGLQPRQVAIWFQNRRARFKNKQLEKDYDALKTSYDRLKDDYDNLLTEKENLKMEL 165
                          9**************************************************************************************988 PP

          HD-ZIP_I/II  92 k 92 
                           
  Manes.01G191500.1.p 166 V 166
                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-1967133IPR009057Homeodomain-like
PROSITE profilePS5007117.21671131IPR001356Homeobox domain
SMARTSM003892.1E-1773135IPR001356Homeobox domain
CDDcd000862.47E-1774132No hitNo description
PfamPF000463.6E-1676129IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-1978139IPR009057Homeodomain-like
PRINTSPR000316.5E-6102111IPR000047Helix-turn-helix motif
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PRINTSPR000316.5E-6111127IPR000047Helix-turn-helix motif
PfamPF021835.8E-15131172IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAGDKVCNMT ALLKNDTLPC DSLLIPTSAT LHGAKSMVNF ENGGGGDTLD APFFQAIVKE  60
ENGDEDFDVC LNRPGKKRRL TGSQVQFLER NFEVENKLEP ERKIQLAKEL GLQPRQVAIW  120
FQNRRARFKN KQLEKDYDAL KTSYDRLKDD YDNLLTEKEN LKMELVSLKA KLLAREEGIE  180
NLEHIEAINS PNEEHGNPVS KTVPGVISNA TLLATPKREE ASSAGSDVFD SDSPHSFLEP  240
GDSSHVFEPD QSDFSQEEED DLSRSFMPTP YFPKLYHDTP SNSCSFEFPV EDQPFWTWTY  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123131RRARFKNKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G191500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618797.10.0homeobox-leucine zipper protein HAT5-like
TrEMBLA0A2C9WPI70.0A0A2C9WPI7_MANES; Uncharacterized protein
STRINGcassava4.1_011567m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-46homeobox 1