PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G179500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | SRS | ||||||||
Protein Properties | Length: 360aa MW: 37221.8 Da PI: 8.5005 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 218.6 | 1.4e-67 | 139 | 298 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92 sgt++CqdCGnqakkdC+h+RCRtCCksrg+dC+thvkstWvpaa+rrerq ++aaa a +s +++ k++r +++++++s+t++s Manes.01G179500.1.p 139 SGTTTCQDCGNQAKKDCSHRRCRTCCKSRGYDCTTHVKSTWVPAARRRERQLMAAAAGGGAGSSGSTSGVKKPRLI-NSQTTTTSHTSTS 227 7899***********************************************9999999999999999999999986.788899999**** PP DUF702 93 saeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +++++++++tss lP +v+++avf+cvrv++vd ge+e+aYq++v+igGhvfkG+LydqG+e Manes.01G179500.1.p 228 NTTPPRSFDTSSshqdasfkdaLPGKVRAPAVFKCVRVTAVDGGEDEYAYQAVVKIGGHVFKGFLYDQGVE 298 **********999********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.0E-61 | 141 | 298 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.2E-26 | 143 | 185 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 5.1E-29 | 250 | 297 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MGMFVVAPAA SFNHHHHHHQ HQHLHQHESS INLSDPINGP NAATTALGVG MGVGVIPLLT 60 AAPCLSPQNM DDQDLLNNGR NKISGIQFWQ NQTSNHHSQY NLKKTSASIL DHNNSSGNLL 120 QSGNNTSSAG GIGGNSASSG TTTCQDCGNQ AKKDCSHRRC RTCCKSRGYD CTTHVKSTWV 180 PAARRRERQL MAAAAGGGAG SSGSTSGVKK PRLINSQTTT TSHTSTSNTT PPRSFDTSSS 240 HQDASFKDAL PGKVRAPAVF KCVRVTAVDG GEDEYAYQAV VKIGGHVFKG FLYDQGVEGR 300 DGFPNISELH LGGGSSSGGG GDGGGRNGAS SSPIIDPTDV YGASGGGLLG GSSYGNPIN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G179500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021634050.1 | 0.0 | protein LATERAL ROOT PRIMORDIUM 1-like | ||||
Swissprot | Q94CK9 | 1e-83 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A2C9WM92 | 0.0 | A0A2C9WM92_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_010457m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6504 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 4e-71 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G179500.1.p |
Publications ? help Back to Top | |||
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