PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G172100.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 697aa    MW: 77216.9 Da    PI: 9.4773
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G172100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07596645147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Manes.01G172100.2.p 596 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 645
                          6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.37E-7403490IPR029071Ubiquitin-related domain
PROSITE profilePS500539.003407477IPR000626Ubiquitin domain
PROSITE profilePS5129414.733591650IPR017930Myb domain
SMARTSM007172.0E-7595648IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-10596646IPR009057Homeodomain-like
SuperFamilySSF466891.7E-15597677IPR009057Homeodomain-like
CDDcd116602.77E-17597647No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPPTP RATRSARRRS SFKKKTGENQ MCAFDLLAIV AGNLLLEKGN  60
NTPSSSDISA DKDHCKVANN AVKNECQNDE KNMKVEVHDQ GSITRSFFVS ELVSQGNEQN  120
HCSKEYLYAE NDLNLGLAAT VATSECAERI GSGMMVNSKS QNEIRTFAGN LDVGPSLLRE  180
FDNCKLERET KKLIKDEPHK CGKVQNGTVA NMCSFEDPVV WDEKPHTLVS SGSSTKVPLR  240
GNNNSHSSYP TNGDNVNVNS RDDDENSSGC THPSTTKKFF RPAPRIGDRR IRKILASKYW  300
KGAPRSNDAT LSNTDGADSK PLYHKRKNYY KYQRSERLYP FKKRKHFAYG SQLDSGEGMS  360
NEFVSDSPKK GNDEDAAGSC SKLHAAIEAP SSVAGQHNSF RPRHSHVKLR IKSFKVPELF  420
IEIPESATVG LLKRTVMEAV TTILGGGLRV GVLLQGKKIR DDHKTLQQTG ICHNNQLDAL  480
GFSLEPNSSR AAPSFCPVDS PFLIDTAQPV SRYPPAPSVA HHATCAASPE PHQTNLGNLI  540
ESDHDSAPSP TAMSIEKGTT DSKALVPVPE MNIEALAVVP ADLKSKRSEI VQRRIRRPFS  600
VAEVEALVQA VEKLGTGRWR DVKLRAFDNA KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP  660
VPQELLDRVL TAHAYWSHQQ AKQHIKQQQQ PPSLEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A5e-585806861107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324344KRKNYYKYQRSERLYPFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G172100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623228.10.0telomere repeat-binding protein 5-like isoform X2
TrEMBLA0A2C9WM210.0A0A2C9WM21_MANES; Uncharacterized protein
STRINGcassava4.1_002767m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-134TRF-like 2