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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G145500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | WOX | ||||||||
Protein Properties | Length: 289aa MW: 32355.3 Da PI: 5.4046 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.6 | 6e-20 | 34 | 95 | 2 | 57 |
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t++q+++L++l+++ r psae++++++++l +++ ++V++WFqN++a+e++ Manes.01G145500.1.p 34 STRWTPTTDQIRILKDLYYNsgVRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 95 58*****************8789*************************************97 PP | |||||||
2 | Wus_type_Homeobox | 114.7 | 4.5e-37 | 33 | 97 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRWtPt++Qi+iL++ly+ sG+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+ Manes.01G145500.1.p 33 SSTRWTPTTDQIRILKDLYYnSGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 97 789***************9779*****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.17E-11 | 29 | 100 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.511 | 30 | 96 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.6E-5 | 32 | 100 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.3E-17 | 35 | 95 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-7 | 35 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.16E-6 | 35 | 97 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0080166 | Biological Process | stomium development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MEPQQQQQQQ QNQQQPNDDN SSGAKGNFLC RQSSTRWTPT TDQIRILKDL YYNSGVRSPS 60 AEQIQRISAR LRQYGKIEGK NVFYWFQNHK ARERQKKRFT TDVPMQQRTV SNASSWKPED 120 YSFHNKYPNI APGFSSASPS SAAGLPVGQM GNYGYGSVTM EKSFRDCSIS ATANGGVGGS 180 MSPNCGWVGI DPYCSSYSLF DKQKSTNETL EDEEQDQDQE EEATPGIETL PLFPTQREDI 240 NGFCNMKHHP ICYSENYCYG SDDGNNASRT SLELSLNSYS NGQARDSI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00265 | DAP | Transfer from AT2G17950 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G145500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ232063 | 8e-93 | FJ232063.1 Populus tomentosa wuschel 1 mRNA, complete cds. | |||
GenBank | KR493404 | 8e-93 | KR493404.1 Populus tomentosa genotype 21 Wuschela gene, complete cds. | |||
GenBank | KR493405 | 8e-93 | KR493405.1 Populus tomentosa genotype 22 Wuschela gene, complete cds. | |||
GenBank | KR493406 | 8e-93 | KR493406.1 Populus tomentosa genotype 23 Wuschela gene, complete cds. | |||
GenBank | KR493407 | 8e-93 | KR493407.1 Populus tomentosa genotype 24 Wuschela gene, complete cds. | |||
GenBank | KR493408 | 8e-93 | KR493408.1 Populus tomentosa genotype 25 Wuschela gene, complete cds. | |||
GenBank | KR493409 | 8e-93 | KR493409.1 Populus tomentosa genotype 26 Wuschela gene, complete cds. | |||
GenBank | KR493410 | 8e-93 | KR493410.1 Populus tomentosa genotype 27 Wuschela gene, complete cds. | |||
GenBank | KR493411 | 8e-93 | KR493411.1 Populus tomentosa genotype 28 Wuschela gene, complete cds. | |||
GenBank | KR493412 | 8e-93 | KR493412.1 Populus tomentosa genotype 29 Wuschela gene, complete cds. | |||
GenBank | KR493413 | 8e-93 | KR493413.1 Populus tomentosa genotype 30 Wuschela gene, complete cds. | |||
GenBank | KR493414 | 8e-93 | KR493414.1 Populus tomentosa genotype 31 Wuschela gene, complete cds. | |||
GenBank | KR493415 | 8e-93 | KR493415.1 Populus tomentosa genotype 32 Wuschela gene, complete cds. | |||
GenBank | KR493416 | 8e-93 | KR493416.1 Populus tomentosa genotype 33 Wuschela gene, complete cds. | |||
GenBank | KR493417 | 8e-93 | KR493417.1 Populus tomentosa genotype 34 Wuschela gene, complete cds. | |||
GenBank | KR493418 | 8e-93 | KR493418.1 Populus tomentosa genotype 35 Wuschela gene, complete cds. | |||
GenBank | KR493419 | 8e-93 | KR493419.1 Populus tomentosa genotype 36 Wuschela gene, complete cds. | |||
GenBank | KR493420 | 8e-93 | KR493420.1 Populus tomentosa genotype 37 Wuschela gene, complete cds. | |||
GenBank | KR493421 | 8e-93 | KR493421.1 Populus tomentosa genotype 38 Wuschela gene, complete cds. | |||
GenBank | KR493422 | 8e-93 | KR493422.1 Populus tomentosa genotype 39 Wuschela gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021607970.1 | 0.0 | protein WUSCHEL-like | ||||
Swissprot | Q8LL11 | 3e-87 | WUS_PETHY; Protein WUSCHEL | ||||
TrEMBL | A0A2C9WN57 | 0.0 | A0A2C9WN57_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_028209m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8241 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 2e-43 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G145500.1.p |
Publications ? help Back to Top | |||
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