PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G143300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 355aa    MW: 40053.1 Da    PI: 5.5306
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G143300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.21.4e-2271323128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                           GfrF+Ptde+lv++yL+kk++++ l+l   i+e+diy  +Pw++  +vk+   + ++++ ++ k  ++ +  r + sg+Wk + +++  
  Manes.01G143300.1.p   7 CGFRFKPTDEDLVHFYLQKKLDRQALPL-GLITECDIYAGNPWKILDNVKN--FDGFYYVFTNLKRMSKAKIDRRAGSGTWKGQTTNRFQ 93 
                          6***************************.99**************755544..344555555666666778888889*****98887766 PP

                  NAM  93 lskkgelvglkktLvfy...kg.rapkgektdWvmheyrl 128
                           s +g+  + kk ++f    k+ ++   ++ +W+m e++l
  Manes.01G143300.1.p  94 QS-EGKSRWAKKAFIFEvdkKNlKSVGQNNGRWLMVEFSL 132
                          66.9999*********9765332444455899******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-265149IPR003441NAC domain
PROSITE profilePS5100526.965149IPR003441NAC domain
PfamPF023654.9E-148132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MSSPWLCGFR FKPTDEDLVH FYLQKKLDRQ ALPLGLITEC DIYAGNPWKI LDNVKNFDGF  60
YYVFTNLKRM SKAKIDRRAG SGTWKGQTTN RFQQSEGKSR WAKKAFIFEV DKKNLKSVGQ  120
NNGRWLMVEF SLGDEGFDGK AVLCRIYNKH ARDFHKKEQV GVDYSNCEAI VPYVKKKQVS  180
LADDKEGNQH PTKKMKKQRS IADDEEGHQN SKKMKQQEPV DLYGESIGST SCCPSNFVVE  240
QLPVSSDYSS RFPEDEAVFL ADGELNSLLD FPSDYDLTSL LLDMDVGTGT FPEDELSKFL  300
AENIDDGGFF SSMPPLTMQC NKVNKDDENG NNLSSSMPLQ GGLCDRNAVL RDVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-14815120167NO APICAL MERISTEM PROTEIN
1ut4_B1e-14815120167NO APICAL MERISTEM PROTEIN
1ut7_A1e-14815120167NO APICAL MERISTEM PROTEIN
1ut7_B1e-14815120167NO APICAL MERISTEM PROTEIN
4dul_A1e-14815120167NAC domain-containing protein 19
4dul_B1e-14815120167NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G143300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6051820.0KR605182.1 Manihot esculenta NAC transcription factors 44 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624279.10.0transcription factor JUNGBRUNNEN 1-like
TrEMBLA0A2C9WKT20.0A0A2C9WKT2_MANES; Uncharacterized protein
STRINGcassava4.1_021626m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1653238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.25e-17NAC domain containing protein 47