PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G139800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 379aa MW: 42257 Da PI: 6.6426 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.5 | 7.6e-06 | 277 | 315 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++++++++L++l+ + +K + a++L++A+ YI+ L Manes.01G139800.1.p 277 VRKENLRERIANLQRLVAPY-----GKTDTASVLTEAIGYIQFL 315 58899************999.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.573 | 266 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.20E-5 | 276 | 320 | No hit | No description |
SuperFamily | SSF47459 | 5.37E-11 | 276 | 329 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-8 | 276 | 323 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MEPENLHPQH HLQEQYGGYY SSLLFQPEYK ASSNNNMNPD IFLESWQPYR GSLYPAGSMS 60 FCATAAPRCF TQQSADELLL SKIKEEMTDS FPRLSEIVSS PCTDNILESH SVSTMYKLDH 120 HHDENQWLCS NFSSADHVTE LQLSAGLELN YCNNNVQDCT SILESSSSAS SRSNYFSHFL 180 PSINISNSDL DLNLQAVDLL TPKSDAASAI SRKQKASQNS SVDHFMGELI KESPASSSNK 240 ASDFEDAVQR KKRSSSFVET KKKHDPPSRS SCPPLKVRKE NLRERIANLQ RLVAPYGKTD 300 TASVLTEAIG YIQFLHDQVQ TLSVPYMRSS NSNPTRKMQA SSSEEDGKRQ PKRDLVNRGL 360 RLVPLSCVSF FNGYSAGI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G139800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021594406.1 | 0.0 | transcription factor bHLH110-like | ||||
TrEMBL | A0A2C9WNA2 | 0.0 | A0A2C9WNA2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_027173m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4045 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27660.1 | 4e-39 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G139800.1.p |