PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G129900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 415aa    MW: 47447.9 Da    PI: 5.5712
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G129900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.61.2e-34151052101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+ye+++d+ +++++sws+ g sfvv+++ efa+ +LpkyFkh+nf+SFvRQLn+YgF+k++ ++         weF++++F +g++
  Manes.01G129900.1.p  15 FLIKTYEMIDDPLTNSVVSWSHGGCSFVVWNPPEFAQVLLPKYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFANEEFIRGQR 95 
                          9****************************************************************999.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          +ll++i+r+k
  Manes.01G129900.1.p  96 HLLSNIRRRK 105
                          ********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-37698IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.71E-3511104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-5911104IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.2E-3015104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MDSSQGSSSN APAPFLIKTY EMIDDPLTNS VVSWSHGGCS FVVWNPPEFA QVLLPKYFKH  60
NNFSSFVRQL NTYGFRKIDP DQWEFANEEF IRGQRHLLSN IRRRKPIHSH SMQNLVNNSP  120
MTEAEKREYE EKIKRLKHDK SLLQLELQRH ETEKQAFQGQ ILSLGERLQT MERRQIQLVS  180
FLSQLAKKPG FASIFMQQSE YQSRKRRLLE LDYFNVDFKM EESESSHSLK DSTSNLELVD  240
KLDSSMKCIE EFFYGAGEAF THDMQPSPII LRVLSASSID GETCSPRSHQ SSLHSMDIPS  300
SPELPPCINH INSLNTPPES PQFDVNCEPI SSAPVVEAVK ESESELETTN SSTPQGANDH  360
FWEYFLTEAP GGSSTQAVEH GFERRTSDER LWWNANTIND LTKHMEHLAP TERT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-25910424129Heat shock factor protein 1
5d5v_B6e-25910424129Heat shock factor protein 1
5d5v_D6e-25910424129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G129900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617668.10.0heat stress transcription factor A-4c-like
TrEMBLA0A2C9WLM60.0A0A2C9WLM6_MANES; Uncharacterized protein
STRINGcassava4.1_008616m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141001620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.13e-83heat shock transcription factor A4A