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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Manes.01G128500.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 276aa MW: 31732.8 Da PI: 9.4731 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Manes.01G128500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 97.1 | 7.5e-31 | 58 | 107 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fs++g+lyey+
Manes.01G128500.1.p 58 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSTRGRLYEYA 107
79***********************************************8 PP
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| 2 | K-box | 106.5 | 3.1e-35 | 127 | 222 | 5 | 100 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94
+ s++e +++ +qqe++kL+++i+++q+ +Rh+lGe L++L+lkeL++Le +Lek+++k+RskKne+l+++ie++qk+e elq++n+ L
Manes.01G128500.1.p 127 NPASASEVNTQFYQQESSKLRRQIREIQNLNRHILGEALSTLTLKELKNLEGRLEKGISKVRSKKNEMLFAEIEYMQKREIELQNDNMFL 216
34458999********************************************************************************** PP
K-box 95 rkklee 100
r+k++e
Manes.01G128500.1.p 217 RAKIAE 222
***986 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 3.6E-40 | 50 | 109 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 33.095 | 50 | 110 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 3.66E-32 | 51 | 123 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 5.12E-45 | 51 | 127 | No hit | No description |
| PRINTS | PR00404 | 1.4E-32 | 52 | 72 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 52 | 106 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 5.8E-26 | 59 | 106 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.4E-32 | 72 | 87 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.4E-32 | 87 | 108 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 2.0E-25 | 135 | 220 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 14.958 | 136 | 226 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0048481 | Biological Process | plant ovule development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 276 aa
Download sequence Send
to blast |
MDSEQEITWR NRVLCTCVTI SILNSQLRAE VATTEFHNQE PDQGPSLRKT GRGKIEIKRI 60
ENTTNRQVTF CKRRNGLLKK AYELSVLCDA EIALIVFSTR GRLYEYANNS VRGTIERYKK 120
ANADSSNPAS ASEVNTQFYQ QESSKLRRQI REIQNLNRHI LGEALSTLTL KELKNLEGRL 180
EKGISKVRSK KNEMLFAEIE YMQKREIELQ NDNMFLRAKI AENEREQQQQ TNIMAGGSVY 240
GSAPSQQYDR NFFPVNLLEP NNHYSRPDHT ALQLV*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1egw_A | 3e-20 | 51 | 122 | 1 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_B | 3e-20 | 51 | 122 | 1 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_C | 3e-20 | 51 | 122 | 1 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_D | 3e-20 | 51 | 122 | 1 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 3kov_A | 5e-20 | 51 | 122 | 1 | 72 | Myocyte-specific enhancer factor 2A |
| 3kov_B | 5e-20 | 51 | 122 | 1 | 72 | Myocyte-specific enhancer factor 2A |
| 3kov_I | 5e-20 | 51 | 122 | 1 | 72 | Myocyte-specific enhancer factor 2A |
| 3kov_J | 5e-20 | 51 | 122 | 1 | 72 | Myocyte-specific enhancer factor 2A |
| 3p57_A | 5e-20 | 51 | 122 | 1 | 72 | Myocyte-specific enhancer factor 2A |
| 3p57_B | 5e-20 | 51 | 122 | 1 | 72 | Myocyte-specific enhancer factor 2A |
| 3p57_C | 5e-20 | 51 | 122 | 1 | 72 | Myocyte-specific enhancer factor 2A |
| 3p57_D | 5e-20 | 51 | 122 | 1 | 72 | Myocyte-specific enhancer factor 2A |
| 3p57_I | 5e-20 | 51 | 122 | 1 | 72 | Myocyte-specific enhancer factor 2A |
| 3p57_J | 5e-20 | 51 | 122 | 1 | 72 | Myocyte-specific enhancer factor 2A |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
| Publications
? help Back to Top |
- Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
Plant Mol. Biol., 2001. 45(5): p. 541-53
[PMID:11414613] - Jaillon O, et al.
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
Nature, 2007. 449(7161): p. 463-7
[PMID:17721507] - Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
Plant Physiol., 2009. 149(1): p. 354-69
[PMID:18997115] - Grimplet J,Martínez-Zapater JM,Carmona MJ
Structural and functional annotation of the MADS-box transcription factor family in grapevine.
BMC Genomics, 2016. 17: p. 80
[PMID:26818751]
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