PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G123600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | NAC | ||||||||
Protein Properties | Length: 639aa MW: 72798 Da PI: 6.1108 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.7 | 1.8e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgk Manes.01G123600.1.p 6 LPPGFRFHPTDEELVAYYLKRKINGHKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGK 94 79****************************.99***************6434555777******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++v s + ++vg+kktLv+y+grap+g++tdWvmheyrl Manes.01G123600.1.p 95 DRKVNS-QMRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133 ******.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-64 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.925 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.3E-30 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 639 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELV AYYLKRKING HKIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QMRAVGMKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDERECET ASGLQDAYAL CRVFKKSANI PKMGEHFAST SNQMASEHSS 180 SIELYSEGRC EDFESSNYNM PIDTCSPSIG NTGSPIHLAE TRDGKWKQFL SEDAFTFSSP 240 SFSSYGALPY PLPKIDVAFE CARLQHSSLP PLEVEDFPHL GLTDVKVMHE NTNRKDILQE 300 ILSVAHASQE LINHSNTQDT WGGNYAADNN NFSFVAGKDM HLYSNINSMR CMDKSWGDPN 360 LRFIEIGNSA EDFKTERMTE NLRWVGMTDE ELHKSFMEEH KVVPIENIST FQTREGNELQ 420 GGNGHQVDCM GFNETDDYSL GFINDDDPNG NLIDESNVDD LASSPSFEVV EEIKVSHGMF 480 VSTRQAAETF FHRLVPSQTV KIHLNPADTF SMQKIEMHSA ADETQSFKTN TFSRESNFME 540 MSKSLNPWKK FATAVFCTIV ILMSKLMMHR MRENGYNVKP RKMEERNKWN HDYSENDLLV 600 SIRSGGNQFS VLLKKLGIFL TISLAVCTMW VNHVMLTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-57 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-57 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-57 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-57 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-57 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-57 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-57 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-57 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-57 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-57 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-57 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-57 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-57 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-57 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G123600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR605223 | 0.0 | KR605223.1 Manihot esculenta NAC transcription factors 85 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021592555.1 | 0.0 | NAC domain-containing protein 86-like | ||||
TrEMBL | A0A0M5J8S1 | 0.0 | A0A0M5J8S1_MANES; NAC transcription factors 85 | ||||
STRING | cassava4.1_031698m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4421 | 34 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-175 | NAC domain containing protein 28 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G123600.1.p |
Publications ? help Back to Top | |||
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