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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G123100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB_related | ||||||||
Protein Properties | Length: 452aa MW: 50164.5 Da PI: 7.3141 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.9e-16 | 25 | 69 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT++E++++++a k++G W++I +++g ++t+ q++s+ qk+ Manes.01G123100.2.p 25 RERWTEDEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 69 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.84E-16 | 19 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.885 | 20 | 74 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 4.4E-17 | 23 | 72 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.1E-13 | 24 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-13 | 25 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-9 | 25 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.70E-10 | 27 | 70 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MVGGLVVSAA MAVQVRKPYT ITKQRERWTE DEHKKFLEAL KLYGRAWRRI EEHVGTKTAV 60 QIRSHAQKFF SKVVREASGN TTSSVEPIEI PPPRPKRKPM HPYPRKLVHP LNKEPSIPEQ 120 PLRSSSPNFS ISEQENQSPT SVLSAFGSDA LGSIDSNSPN RSLSPVSCAG GSHPADFTIC 180 EPNLGTEDHG SPVTITAAAL NEQFPQAQKL DLFPREEDVF YEEGLVEETS TRSLKLFGRT 240 VLVTECQSYR PSSPTMENSK VLPLLDTNEG KPILPWNFMA TELPHENREC TLSPLSHGPA 300 GTLYCLQFQK DNSNSLEATP SLPLLAFCGG MPFPLVPFHK QDPVKVHLDS NGEERRGKYI 360 YKEGSGSNSG SVNDGGSLDK NIDGETQSRQ HCYGEKELYP IPELKLSDKS ASTNRCMKGF 420 VPYRKRTAER GSQSSTITVE EREEQRIRLC L* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00515 | DAP | Transfer from AT5G17300 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G123100.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021592491.1 | 0.0 | protein REVEILLE 1-like | ||||
Swissprot | F4KGY6 | 3e-63 | RVE1_ARATH; Protein REVEILLE 1 | ||||
TrEMBL | A0A2C9WMF2 | 0.0 | A0A2C9WMF2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_006216m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 3e-62 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G123100.2.p |
Publications ? help Back to Top | |||
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