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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Manes.01G123100.2.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
| Family |
MYB_related |
| Protein Properties |
Length: 452aa MW: 50164.5 Da PI: 7.3141 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Manes.01G123100.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 50.8 | 3.9e-16 | 25 | 69 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
r rWT++E++++++a k++G W++I +++g ++t+ q++s+ qk+
Manes.01G123100.2.p 25 RERWTEDEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 69
78******************88.*********.************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0007623 | Biological Process | circadian rhythm |
| GO:0009734 | Biological Process | auxin-activated signaling pathway |
| GO:0010600 | Biological Process | regulation of auxin biosynthetic process |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 452 aa
Download sequence Send
to blast |
MVGGLVVSAA MAVQVRKPYT ITKQRERWTE DEHKKFLEAL KLYGRAWRRI EEHVGTKTAV 60
QIRSHAQKFF SKVVREASGN TTSSVEPIEI PPPRPKRKPM HPYPRKLVHP LNKEPSIPEQ 120
PLRSSSPNFS ISEQENQSPT SVLSAFGSDA LGSIDSNSPN RSLSPVSCAG GSHPADFTIC 180
EPNLGTEDHG SPVTITAAAL NEQFPQAQKL DLFPREEDVF YEEGLVEETS TRSLKLFGRT 240
VLVTECQSYR PSSPTMENSK VLPLLDTNEG KPILPWNFMA TELPHENREC TLSPLSHGPA 300
GTLYCLQFQK DNSNSLEATP SLPLLAFCGG MPFPLVPFHK QDPVKVHLDS NGEERRGKYI 360
YKEGSGSNSG SVNDGGSLDK NIDGETQSRQ HCYGEKELYP IPELKLSDKS ASTNRCMKGF 420
VPYRKRTAER GSQSSTITVE EREEQRIRLC L*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}. |
