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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G117200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB_related | ||||||||
Protein Properties | Length: 206aa MW: 23301.5 Da PI: 8.3421 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.8 | 1.4e-09 | 37 | 69 | 22 | 48 |
T.......-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 22 g.......tWktIartmgkgRtlkqcksrwqkyl 48 + +W++Ia +++ gRt++++k++w+++l Manes.01G117200.1.p 37 RsgksilhRWSLIAGRLP-GRTANDVKNYWNTHL 69 055556668*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.015 | 23 | 69 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 4.68E-8 | 37 | 73 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-7 | 41 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-13 | 44 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.75E-6 | 45 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MERVLESTRW SYELWCLLKL VFWVNRFKSN IVIGSNRSGK SILHRWSLIA GRLPGRTAND 60 VKNYWNTHLK KDASARINAK EDKRIFGPVV EKPLLLLTTH VPVNDNNNTL CKPCMPLPPS 120 NDHVKWWESL LKENEVNQKD TSCDSGSGET HISRLSGEEM NAAAVQVGVT KVGDVGFNKE 180 GHIWGSNFYF DVGLWDLFDT HVNIP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G117200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021632769.1 | 6e-38 | transcription factor MYB90-like | ||||
TrEMBL | A0A2C9WKD9 | 1e-150 | A0A2C9WKD9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_029945m | 1e-115 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 9e-15 | myb domain protein 82 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G117200.1.p |