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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G110600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 255aa MW: 28321.9 Da PI: 8.4892 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.2 | 8e-10 | 146 | 193 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR++iN+++ L++l+P + +k + a +Le+ ++Y++sLq Manes.01G110600.1.p 146 SHSIAERVRREKINNKLRCLQDLVPGC----HKSMGMAVMLEEIINYVHSLQ 193 8*************************9....788*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.24E-10 | 140 | 197 | No hit | No description |
SuperFamily | SSF47459 | 3.4E-17 | 140 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.243 | 142 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 142 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-7 | 146 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-9 | 148 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDMNIQMLKQ LPELNPNTLE NFSVSNFSVD SFLAHHQHPP EFPATYCLNN LSSTLHHSDI 60 LSSAPIANIT SSSSQNGFPA DNCKKRKAEP QSTSSSKNIS PTASTSNTRK KNKLSRGKKG 120 KNKEKEVDEA EEVIHVRAKR GQATDSHSIA ERVRREKINN KLRCLQDLVP GCHKSMGMAV 180 MLEEIINYVH SLQNQVEFLS MELAAASCSY DLNLKIESSK KAQGTNSPEA QERQKWCREG 240 YGDQLGCFQA AWSI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G110600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021623512.1 | 0.0 | transcription factor BEE 3-like | ||||
Swissprot | Q8GWK7 | 3e-51 | BEE3_ARATH; Transcription factor BEE 3 | ||||
TrEMBL | A0A2C9WL02 | 0.0 | A0A2C9WL02_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_014461m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14412 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25330.1 | 8e-50 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G110600.1.p |
Publications ? help Back to Top | |||
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