 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Manes.01G103200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 242aa MW: 27881.6 Da PI: 6.9555 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Manes.01G103200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 94.3 | 5.7e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+ rqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
Manes.01G103200.1.p 9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59
79***********************************************96 PP
|
| 2 | K-box | 97.6 | 1.9e-32 | 75 | 171 | 3 | 99 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92
++++++++++++ +++ e +kL ++ie Lqr++R++ GedL+ +sl+eLq+Leqq++++lk++R++Kn+l+ e+i+elqkkek+l+e+n+
Manes.01G103200.1.p 75 SAEQVNNQSEQQGNWSLECSKLMARIEVLQRSLRNFAGEDLDGMSLRELQHLEQQIDTGLKRVRTRKNQLYNESISELQKKEKALHEQNN 164
566677889999****************************************************************************** PP
K-box 93 aLrkkle 99
+L+k+le
Manes.01G103200.1.p 165 MLSKQLE 171
****997 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 32.099 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 2.7E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 2.78E-41 | 2 | 76 | No hit | No description |
| SuperFamily | SSF55455 | 1.57E-33 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.2E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 3.9E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.2E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.2E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.5E-27 | 81 | 170 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 16.736 | 86 | 176 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 242 aa
Download sequence Send
to blast |
MGRGRVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD AEVALIVFST KGKLFEYSTD 60
SSMESILEKY ERYSSAEQVN NQSEQQGNWS LECSKLMARI EVLQRSLRNF AGEDLDGMSL 120
RELQHLEQQI DTGLKRVRTR KNQLYNESIS ELQKKEKALH EQNNMLSKQL EQNEKTMAEG 180
SNWEQQNLGQ NPTSFMPLPP PAIGGTLQTR EFMKENEEGM AQIEEPNTMQ MPSWMLRHVN 240
E*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY515153 | 1e-54 | AY515153.1 Populus deltoides APETALA-like protein AP1 mRNA, complete cds. |
