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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G101000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 403aa MW: 45128.9 Da PI: 4.2989 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.4 | 7.6e-18 | 42 | 91 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g Manes.01G101000.1.p 42 RFVGVRQRP-SGRWVAEIKDtI----QKIRVRLGTFDTAEEAARAYDEAACLLRG 91 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.70E-29 | 41 | 98 | No hit | No description |
Pfam | PF00847 | 9.7E-13 | 42 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.21E-18 | 42 | 99 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-25 | 42 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.241 | 42 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-32 | 42 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.1E-6 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.1E-6 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MGRKRKGGGE AVEDKNSTEA TVAWDEMVKE GALGGVRRVR KRFVGVRQRP SGRWVAEIKD 60 TIQKIRVRLG TFDTAEEAAR AYDEAACLLR GANTRTNFWP CSSSSSTTPA LPSKITNLLL 120 QRLKASPPSV PPSLPINLQE LQEVEEYREE TADFSDTQFT DFLNDPEDYT TCSNDNINTT 180 SSSAVDYMER SLEPCLTEKE DNGGRELDFE YCNWHDIAES CSFNVNNSED EGEEDEEEDE 240 GEGIDMGALD FHFVDDVESS CYYSPFEIAE EIDEPVEPVT FGDECSMLRA AMKRMKYERK 300 FSASLYAFNG IPECIRLKLE SGNVKGRERS AQLTNLRDAC GKIKEKERKA KEENLEVMEK 360 KQENSQSSSI KMEASASSSS LSNDGELSLW NSLDLPPICF VN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G101000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF155958 | 2e-81 | EF155958.1 Populus trichocarpa WIN1-like protein (WIN1L) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021604345.1 | 0.0 | ethylene-responsive transcription factor RAP2-2-like | ||||
TrEMBL | A0A2C9WJC6 | 0.0 | A0A2C9WJC6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_027506m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3338 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 4e-14 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G101000.1.p |