PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G093200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | NAC | ||||||||
Protein Properties | Length: 350aa MW: 39518.5 Da PI: 6.7615 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.1 | 1.2e-55 | 17 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yL +kv ++ + + ++i evd++k+ePwdLp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdk Manes.01G093200.1.p 17 LPPGFRFHPTDEELITHYLSQKVLDNCFCA-RAIGEVDLNKCEPWDLPWRAKMGEKEWYFFCVRDRKYPTGLRTNRATDAGYWKATGKDK 105 79************************9988.89***************888999************************************ PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 e+++ ++lvg+kktLvfykgrap+g+k++Wvmheyrle Manes.01G093200.1.p 106 EIYR-AKTLVGMKKTLVFYKGRAPRGTKSNWVMHEYRLE 143 ****.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-63 | 13 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.063 | 17 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-29 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MENNSILSWD DDEQMELPPG FRFHPTDEEL ITHYLSQKVL DNCFCARAIG EVDLNKCEPW 60 DLPWRAKMGE KEWYFFCVRD RKYPTGLRTN RATDAGYWKA TGKDKEIYRA KTLVGMKKTL 120 VFYKGRAPRG TKSNWVMHEY RLEGKYSAYN LPKTAKNEWV ICRVFQKSSG GKKIHISGLG 180 RVSSCGNELR PPALLPPLMD SSPHNSETRN SSGDASYVTC FSKPMEPKED MVDSFNNSSS 240 SNISPTSVLI SKTSVPSSFY SSEISPNFAN FQYPACVFTP EQSISRMFLE NQGPNMKQNS 300 KMELSQDTGL NSDISSVVIN PELIHRSFED QEAPSSCAGP ADFDCLWSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-54 | 14 | 173 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-54 | 14 | 173 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-54 | 14 | 173 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-54 | 14 | 173 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-54 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-54 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-54 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-54 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-54 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-54 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-54 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-54 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-54 | 14 | 173 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-54 | 14 | 173 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G093200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR605156 | 0.0 | KR605156.1 Manihot esculenta NAC transcription factors 18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021617314.1 | 0.0 | NAC domain-containing protein 79-like | ||||
Swissprot | Q9FLR3 | 1e-136 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | A0A0M5JKF8 | 0.0 | A0A0M5JKF8_MANES; NAC transcription factors 18 | ||||
STRING | cassava4.1_010869m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-134 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G093200.1.p |
Publications ? help Back to Top | |||
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