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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G092500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 336aa MW: 37279.5 Da PI: 8.7506 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.9e-16 | 75 | 120 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W Ed +l+++v+++G+ +W++Ia++++ gR++k+c++rw++ Manes.01G092500.1.p 75 RGHWKVAEDAKLKELVALHGPQNWNRIAEKLQ-GRSGKSCRLRWFNQ 120 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.4e-17 | 127 | 170 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + ++++eE+e+l a++ G++ W++Iar ++ gRt++ +k++w+ Manes.01G092500.1.p 127 KSAFSKEEEERLMAAHRICGNK-WSLIARLIP-GRTDNAVKNHWHV 170 5789******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.348 | 70 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-14 | 74 | 123 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.39E-26 | 75 | 168 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.7E-16 | 75 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-25 | 76 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.11E-12 | 78 | 119 | No hit | No description |
PROSITE profile | PS51294 | 25.57 | 122 | 176 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-13 | 126 | 174 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-14 | 127 | 169 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-10 | 129 | 169 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-20 | 129 | 175 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
METLTDMGSQ DICRSEPSDN KEAHHHLMSS SLLVPKCCDG SLAANQNSSF DDKDKEDKND 60 ECSRISGQSS KLWARGHWKV AEDAKLKELV ALHGPQNWNR IAEKLQGRSG KSCRLRWFNQ 120 LDPRINKSAF SKEEEERLMA AHRICGNKWS LIARLIPGRT DNAVKNHWHV IMARKYREQS 180 LAYRRRKQTN DAKRRVQDGS GSASRDTPMN EVVAKSLNLC SGRIIEPSHH FPLAGFKSEG 240 FYDFTSSEGA GRSGHKSSDI VSQMEHCSFA VLQNKQQSSN HHFSAGFSYS MASPRSQVSE 300 PSSSSSLSFA ENNATSDSVT TISPPFIDFL GVGAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-30 | 75 | 175 | 7 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G092500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021593905.1 | 0.0 | transcription factor MYB1-like | ||||
TrEMBL | A0A2C9WJC3 | 0.0 | A0A2C9WJC3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_029396m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 7e-68 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G092500.1.p |