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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G090900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ZF-HD | ||||||||
Protein Properties | Length: 317aa MW: 34355.8 Da PI: 8.4156 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 108.4 | 3.9e-34 | 62 | 118 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 ++YkeClkNhAa+lGgha+DGCgEfmps++++ ++++++kCaACgCHRnFHRre+e+ Manes.01G090900.2.p 62 ITYKECLKNHAATLGGHALDGCGEFMPSPTANpNDPTSIKCAACGCHRNFHRREPED 118 79******************************9*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.7E-28 | 62 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-23 | 62 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.9E-31 | 63 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.102 | 64 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.08E-18 | 186 | 260 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.5E-29 | 194 | 260 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.3E-25 | 199 | 256 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MDIAPTTTST NNNTPTAKSP DLESETLPRI QSPNPVSFTN GVLKRHSSHH HHLHLSPPPV 60 VITYKECLKN HAATLGGHAL DGCGEFMPSP TANPNDPTSI KCAACGCHRN FHRREPEDSP 120 PPTNTTTTIE YQPHHRHHPP PPPPQAVPQP YRSPNSASPP PISSSYPSAP HMLLALSGGL 180 SAGLNGNSTI NVPGGSSGRK RFRSKFSQNQ KERMHEFAEK VGWKIQKRDE ELIQEFCNEV 240 GVDRGVLKVW MHNNKNTLGK RDANGNGTRS NDLGNSHYTT TTTTTTNNSS ENVNHHHLFE 300 SDNVAHAGTN GSSSSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 9e-21 | 199 | 257 | 17 | 75 | ZF-HD homeobox family protein |
1wh7_A | 9e-21 | 200 | 257 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G090900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021594839.1 | 0.0 | zinc-finger homeodomain protein 10-like | ||||
Swissprot | Q9LXG0 | 2e-76 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A251LPA6 | 0.0 | A0A251LPA6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_011661m | 1e-142 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 2e-35 | homeobox protein 34 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G090900.2.p |
Publications ? help Back to Top | |||
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