PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G085800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family RAV
Protein Properties Length: 319aa    MW: 36809.7 Da    PI: 9.8302
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G085800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.21.3e-102875154
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         s+ kGV   k +g+W A+I        +k ++lg+++ +eeAa a+++a+ kl 
  Manes.01G085800.1.p 28 SKLKGVISLK-SGKWGARIAFK-----YKAHWLGTYDLEEEAAMAYDRAAIKLQ 75
                         6778894445.8******9993.....5**********************9985 PP
2B364.31.9e-20148246186
                          EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                          f k+lt+ dv+  + + +pk++a ++             +++  +s++lt+ d++ r W+++++y+k+ +++v+tkGWk+F + n+Lk +
  Manes.01G085800.1.p 148 FRKELTQTDVTHIKGFHIPKEYAMQYfpplagvssagggDENGSKSIELTFFDRHCRPWTFRYSYWKSTQTFVFTKGWKHFLRMNNLKPK 237
                          889****************************999999663333488999999************************************** PP

                          -EEEEEE-S CS
                   B3  78 DfvvFkldg 86 
                          D v F++ +
  Manes.01G085800.1.p 238 DCVFFYRCE 246
                          *****9442 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-152885IPR016177DNA-binding domain
SMARTSM003802.7E-132990IPR001471AP2/ERF domain
PROSITE profilePS5103215.4092984IPR001471AP2/ERF domain
PfamPF008475.0E-62974IPR001471AP2/ERF domain
CDDcd000184.42E-172984No hitNo description
Gene3DG3DSA:3.30.730.101.0E-143184IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.1E-27140264IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-23146247IPR015300DNA-binding pseudobarrel domain
CDDcd100172.19E-20147244No hitNo description
SMARTSM010192.5E-12148262IPR003340B3 DNA binding domain
PfamPF023627.2E-18148256IPR003340B3 DNA binding domain
PROSITE profilePS5086311.068148262IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MQSSNLNIMN RNQQSTKHCS SSARGSSSKL KGVISLKSGK WGARIAFKYK AHWLGTYDLE  60
EEAAMAYDRA AIKLQRSDAP LNFPMTIYSV QETKFQSRYS NESILDMIKS KTYMSKFTSY  120
LADQSLMREH AARNQANQQH GISYQMLFRK ELTQTDVTHI KGFHIPKEYA MQYFPPLAGV  180
SSAGGGDENG SKSIELTFFD RHCRPWTFRY SYWKSTQTFV FTKGWKHFLR MNNLKPKDCV  240
FFYRCEYQRE TQKRVFYMID AQCSSVETDA VTGNLDKERN AKKRSNNEVD AEDIEEQETD  300
DGVKLFGVQI SKKKKTKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-1714524811106DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G085800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632200.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
TrEMBLA0A2C9WJH90.0A0A2C9WJH9_MANES; Uncharacterized protein
STRINGcassava4.1_024894m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16118910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.14e-60RAV family protein