PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.01G076000.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NAC

Protein Properties

Length: 383aa MW: 44572.2 Da PI: 7.3501

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.01G076000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.7	1.9e-56	36	165	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 +ppGfrFhPtdeelv++yL+kk+++k+++l +vik+vd+yk+ePwdL++ k+ + e++ewyfFs++dkky+tg+r+nratk+g+Wkatg Manes.01G076000.1.p 36 VPPGFRFHPTDEELVDYYLRKKIAAKRIDL-DVIKDVDLYKIEPWDLQElcKIGTeEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATG 124 69**************************.9***********954555552555*************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +dk+++s +++l+g++ktLvfykgrap+g+k+dW+mheyrle Manes.01G076000.1.p 125 RDKAIYS-RHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 165 ***.889***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.11E-62	32	185	IPR003441	NAC domain
PROSITE profile	PS51005	60.161	36	185	IPR003441	NAC domain
Pfam	PF02365	1.0E-28	37	164	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MLIYILKFFA WRLIDPVAFY CRIFSSRKSM NTFSHVPPGF RFHPTDEELV DYYLRKKIAA 60 KRIDLDVIKD VDLYKIEPWD LQELCKIGTE EQNEWYFFSH KDKKYPTGTR TNRATKAGFW 120 KATGRDKAIY SRHSLIGMRK TLVFYKGRAP NGQKSDWIMH EYRLETNENG TPQEEGWVVC 180 RVFKKKMPTI RKVGEYESPC WYDEQVCFMP EMDSPRRITQ PYASYLHHYP CKQEFETLQY 240 NMPHDPLLLQ LPQLESPKVP QSAASANCNS RLPYGGYDTN NGSTLQSSTL TQDEQHHQNL 300 SSLYHNNGEQ AVDQVTDWRV LDKFVAYQLS HEDSSKEVSY SNAAAFHVAE QVNVLASESK 360 RPENVQEYAS TSTSSCQIDL WK*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MLIYILKFFA WRLIDPVAFY CRIFSSRKSM NTFSHVPPGF RFHPTDEELV DYYLRKKIAA  60
KRIDLDVIKD VDLYKIEPWD LQELCKIGTE EQNEWYFFSH KDKKYPTGTR TNRATKAGFW  120
KATGRDKAIY SRHSLIGMRK TLVFYKGRAP NGQKSDWIMH EYRLETNENG TPQEEGWVVC  180
RVFKKKMPTI RKVGEYESPC WYDEQVCFMP EMDSPRRITQ PYASYLHHYP CKQEFETLQY  240
NMPHDPLLLQ LPQLESPKVP QSAASANCNS RLPYGGYDTN NGSTLQSSTL TQDEQHHQNL  300
SSLYHNNGEQ AVDQVTDWRV LDKFVAYQLS HEDSSKEVSY SNAAAFHVAE QVNVLASESK  360
RPENVQEYAS TSTSSCQIDL WK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-50	35	186	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.01G076000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR605203	0.0	KR605203.1 Manihot esculenta NAC transcription factors 65 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021624113.1	0.0	NAC domain-containing protein 7-like
Swissprot	Q9FWX2	1e-156	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A2C9WIL1	0.0	A0A2C9WIL1_MANES; Uncharacterized protein
STRING	cassava4.1_026948m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1269	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-152	NAC 007

Link Out ? help Back to Top
Phytozome	Manes.01G076000.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]