PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G066400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 658aa    MW: 73291.5 Da    PI: 6.4685
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G066400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS428.26.6e-1312766411373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          lv+lL++c+ea+ s++++l+++++a+l +lasp+g++++Rl ayfteALa r++r +++++++ +p+e ++   +++ +al+l+++vsPi
  Manes.01G066400.1.p 276 LVSLLTACVEAIGSKNMALINHCIAKLGDLASPRGSAFKRLSAYFTEALALRVTRLWPHIFHITTPREFDR-VDEDSGTALRLLNQVSPI 364
                          6899*****************************************************************85.566777999********* PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          +kf h+taN+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el+etg+rLa+fAe++++pfef++
  Manes.01G066400.1.p 365 PKFIHFTANEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHIRITGIGE----SKQELNETGDRLARFAEAFNLPFEFHP 450
                          ***********************************************************....*************************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                           v++rled++l++L+vk+gE++a+n+++q+h++l +        +++L l++s++P+ v ++eqea+hn++++  r++++l+yysa+fds
  Manes.01G066400.1.p 451 -VVDRLEDVRLWMLHVKEGECVAINCIFQMHKTLYDGNGGV--LRDFLGLIRSTNPTAVLMAEQEAEHNAPNLEGRVCNSLKYYSAIFDS 537
                          .7*******************************96655444..489******************************************** PP

                 GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve..eesgsl 358
                          ++ +lp +s  r k+E++ ++rei+n+vaceg++r erhe++ekWr+ +e+ GF+   +se+++ q ++ll++++ + yr +  +++++l
  Manes.01G066400.1.p 538 IDYSLPLDSPVRFKIEEM-FAREIRNIVACEGSDRLERHESFEKWRKLMEQGGFRCTGISEREVLQSQMLLKMYSCEDYRAQqgQDKAAL 626
                          ******************.********************************************************888***976778899 PP

                 GRAS 359 vlgWkdrpLvsvSaW 373
                          +l W d+pL++vSaW
  Manes.01G066400.1.p 627 TLSWLDQPLYTVSAW 641
                          9************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.217250620IPR005202Transcription factor GRAS
PfamPF035142.3E-128276641IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRSE SPAQFQACHF HLPSMSTQRL DLPCTTFSRK ESSRSQPIRP  60
VGVGLSVDKS LESKTSSCSL KQNIRLPPLA TSTQSVKNEF WDKGKSLKRF AEQGSVDESC  120
TNRAKRKRGS NDNGNSGDVH EGGNFWFQSG FEVPRSLNPP QVPFSLTCSG DEERVCFVPG  180
EVISPPLPPS NNPWLDSVIT EITGFGEKDA ESSQRRPVKE ASGSSASSES HSLGLRLSEN  240
VVEHEVGNGS RNPHPQQGTA AEVAEENHQE YQAFELVSLL TACVEAIGSK NMALINHCIA  300
KLGDLASPRG SAFKRLSAYF TEALALRVTR LWPHIFHITT PREFDRVDED SGTALRLLNQ  360
VSPIPKFIHF TANEILLRAF EGKDRVHIID FDIKQGLQWP SLFQSLASRT NPPSHIRITG  420
IGESKQELNE TGDRLARFAE AFNLPFEFHP VVDRLEDVRL WMLHVKEGEC VAINCIFQMH  480
KTLYDGNGGV LRDFLGLIRS TNPTAVLMAE QEAEHNAPNL EGRVCNSLKY YSAIFDSIDY  540
SLPLDSPVRF KIEEMFAREI RNIVACEGSD RLERHESFEK WRKLMEQGGF RCTGISEREV  600
LQSQMLLKMY SCEDYRAQQG QDKAALTLSW LDQPLYTVSA WAPLDVAGSS SSFSQPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-7028364326380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G066400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621475.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A2C9WKZ10.0A0A2C9WKZ1_MANES; Uncharacterized protein
STRINGcassava4.1_032133m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein