PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G065200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 339aa    MW: 36921.1 Da    PI: 4.7332
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G065200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1162.4e-36301212102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d+++++lisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ Fk+g+k
  Manes.01G065200.1.p  30 FLTKTYQLVDDPSVDDLISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFKRGEK 110
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                           ll++i+r+k 
  Manes.01G065200.1.p 111 GLLRDIQRRKI 121
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.4E-5926119IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.6E-3827119IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.07E-3627119IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.8E-213053IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.2E-3230119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-216880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-218193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MMPSPVEQTG ESVSTGGGVG DSQRSLPTPF LTKTYQLVDD PSVDDLISWN EDGSTFIVWR  60
PAEFARDLLP KYFKHNNFSS FVRQLNTYGF RKVVPDRWEF ANDCFKRGEK GLLRDIQRRK  120
ISPMGVTTAA AATVTVAAIP PVARAVSPAN SGEQQVISSN SSPATTQVAT PILQITSCTT  180
TPELLEENER LRKENAHLSE ELTRLKGLCN NIFSLMSNYA SGQLEGHCNL PEGKPLDLMP  240
STKMVMRADE VAVSGGTKAV VATVAAEDDV SPKLFGVSIG VKRVRRDEEE EEGNEGNKHQ  300
EQSQDNETGS DVKSEPLDGK TGQSEHHDPS WLELGNDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-273011929129Heat shock factor protein 1
5d5v_B6e-273011929129Heat shock factor protein 1
5d5v_D6e-273011929129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G065200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021630153.10.0heat stress transcription factor B-2b
RefseqXP_021630161.10.0heat stress transcription factor B-2b
SwissprotQ9T0D31e-111HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A2C9WIF10.0A0A2C9WIF1_MANES; Uncharacterized protein
STRINGcassava4.1_027702m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.12e-94HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]