PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G056200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 471aa    MW: 52925.9 Da    PI: 7.0965
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G056200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13300345454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +h e+Er+RR+r+N++f  Lr+++P+       K++Ka+ L  Av YIk+L
  Manes.01G056200.1.p 300 NHVEAERQRRERLNHRFYALRSVVPNV-----SKMDKASLLADAVTYIKEL 345
                          799***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-4724205IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.30E-14295349No hitNo description
SuperFamilySSF474591.57E-18296361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.415296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-17300362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-11300345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-17302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MVEIASPSSS SSFMSFCQDS SPPLQQRLQF ILQSRPEWWV YAIFWQVSKD ATGHLVLSWG  60
DGHFRGTKEF AAKACNKQNQ PKFGFNLERK MINKESQILF SDDIDLDRLA DLDVIDYEWF  120
YTVSVTRSFT VEDGILGRTF GSGAFIWLTG NHELQMHECE RVKEARIHGL QTLACISTPY  180
GVIELGSSTT IDKDWSLVQL CKSLFGGDTA CFVSKEPSLE SHLHIPNTSF LDISMFSASQ  240
KETSVEKQNE GDKKKDATGQ GRSSSDSARS DSDGNFAAGN TDRFKKRGRK QLDGKDLPLN  300
HVEAERQRRE RLNHRFYALR SVVPNVSKMD KASLLADAVT YIKELKAKVD ELESKLQAAS  360
KKSKITNATD NQSTDSMVNH IRSSSIYKAK AMELEVKIVG SEAMIRFLTP DVNYPAARLM  420
DVLREVEFKI YHASMSSIKE MVLQDVVARV PDGLTNEEVV RSAILQRMQN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-32182053192Transcription factor MYC3
4rqw_B6e-32182053192Transcription factor MYC3
4rs9_A6e-32182053192Transcription factor MYC3
4yz6_A6e-32182053192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305310RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G056200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM3473380.0HM347338.1 Hevea brasiliensis lMYC3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622458.10.0transcription factor MYC2-like
TrEMBLA0A2C9WKN10.0A0A2C9WKN1_MANES; Uncharacterized protein
STRINGcassava4.1_027174m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.16e-63bHLH family protein