PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G055400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | NAC | ||||||||
Protein Properties | Length: 417aa MW: 47220.3 Da PI: 6.96 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164 | 5.2e-51 | 15 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatg 87 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi+evd++k+ePwd+++k+k +++wyfFs++dkky+tg+r+nrat++g+Wkatg Manes.01G055400.1.p 15 VPPGFRFHPTEEELLHYYLRKKVAYEKIDL-DVIREVDLNKLEPWDIQEKCKIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATG 103 69****************************.9***************964444222455******************************* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +dk ++s + + +gl+ktLvfykgrap+g+k+dW+mheyrl Manes.01G055400.1.p 104 RDKIIYS-GFRRIGLRKTLVFYKGRAPRGQKSDWIMHEYRL 143 *******.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-57 | 9 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.686 | 15 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-26 | 16 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MGHDMNFSIN GQSQVPPGFR FHPTEEELLH YYLRKKVAYE KIDLDVIREV DLNKLEPWDI 60 QEKCKIGSTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKIIYS GFRRIGLRKT 120 LVFYKGRAPR GQKSDWIMHE YRLDDSSHET TDSNPIGEAI PEEGWVVCRV FRKKNYHKTL 180 GSPKGSSSSM DSKTQILSSG NDGVLDQLLL YMGKTCKLES ESLSHMNQSN ISRYMSVRFL 240 SSNNSGISEG AHESYMHLPR LDSPTLPSLT VSSPSFDQES NFKSCYQPYD EMFTENNELS 300 STTNHHHHHR QDKGFMTSIQ ENNKSGLNDW ATFDRLVASQ LDGHAVETSK QLSCFSDPNG 360 SFGLSPDDGM QLSHLHVHSD RSNQANSQVY SSENDLWSFT NSSSPSSSNP LCHLSV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-49 | 1 | 175 | 1 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G055400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR605228 | 0.0 | KR605228.1 Manihot esculenta NAC transcription factors 90 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021631585.1 | 0.0 | NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 1e-116 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A0M4FBT8 | 0.0 | A0A0M4FBT8_MANES; NAC transcription factors 90 | ||||
STRING | cassava4.1_032633m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3031 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-101 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G055400.1.p |