PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G054100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 474aa    MW: 52704.9 Da    PI: 6.6729
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G054100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.6e-13301345554
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          h e+Er+RR+r+N++f  Lr+++P+       K++Ka+ L  Av YIk+L
  Manes.01G054100.1.p 301 HVEAERKRRERLNHRFYALRSVVPNV-----SKMDKASLLADAVTYIKDL 345
                          99***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.1E-4224204IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.87E-15295349No hitNo description
PROSITE profilePS5088817.218296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-18298362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-17300359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-11301345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-17302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MEEIMSPSSP SSLFSFCQES SPSLQQRLHV IIQSGAGWWV YAIFWQASKD AGDRLVLTWA  60
DGNFHGSKDF VTEPNNKHIQ QKFGLNLEKK LSMEFLAPLG DAMDMDRLIE VDHTNCELFY  120
TVSSTRSFTI GEGILGQAFH SGGFIWLTGD HELQLYECER VKEARLHGIL TLACVSTSCG  180
VVELGSSVVI EEDWSLVQLC QSLFGADIAC LLSKQPSCKS HLQIPDRSTF HIGMFSSPQK  240
ETSPGKQHKG DIKRDPSGSG QGRSSSDSGP PYSEGNYAAG NTNQFQTRGR KPNVKELPLH  300
HVEAERKRRE RLNHRFYALR SVVPNVSKMD KASLLADAVT YIKDLKAKVD DLEAKLNTQS  360
NKSKMISANV YENQSTDCMI DPLMPSSSYR ANKSMAVDVK IVGSQAMIRV QSLDVNYPAA  420
RLMDALRELD FQVHHASFSS INEMVLQDVI VSIPEGLISE KIMESIIFKK MQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-25182043192Transcription factor MYC3
4rqw_B7e-25182043192Transcription factor MYC3
4rs9_A7e-25182043192Transcription factor MYC3
4yz6_A7e-25182043192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304309ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G054100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021607443.10.0transcription factor MYC3-like
TrEMBLA0A2C9WHX10.0A0A2C9WHX1_MANES; Uncharacterized protein
STRINGcassava4.1_028917m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.16e-64bHLH family protein