PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Nin-like

Protein Properties

Length: 1000aa MW: 109441 Da PI: 5.4045

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.01G053000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92	4.5e-29	593	643	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Manes.01G053000.1.p 593 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 643 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.803	582	663	IPR003035	RWP-RK domain
Pfam	PF02042	3.8E-26	596	643	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.5E-23	899	988	No hit	No description
Pfam	PF00564	6.0E-18	903	984	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.9E-27	903	985	No hit	No description
PROSITE profile	PS51745	25.547	903	985	IPR000270	PB1 domain
SMART	SM00666	8.7E-27	903	985	IPR000270	PB1 domain
CDD	cd06407	6.34E-30	904	984	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1000 aa Download sequence Send to blast
MPEQEDDKSK ENQTVGGDKG ETLMDLDLDL DTSWPLDQIS YLSNPLSPLL LSSSDQPCSP 60 LWAFSDADDD RLLPVSSASH ATTPPLRFSD YPIFLACAPN SVAENHTEND DKRKFPSPLL 120 GLMPFDNPDG YCVIKERMTL ALRKFKESTE QHVLAQVWAP TKNGGRYVLT TSGQPFVIDP 180 HSNGLHQYRM VSLMYMFSVD GDCEGELGLP GRVFRQKLPE WTPNVQYYSS KEYSRRDHAL 240 HYNVQGTLAL PVFEPFGQSC VGVLELIMTS QKINYGPEVN KVCKALEAVN LRSSEILDHP 300 STQICNEGRR NALAEILEIL TVVCETHKLA LAQTWVPCMH RSVLAFDGGL KKSCTSFDGS 360 CNGQVCMSTT DVAFYVVDPH MWGFREACLE HHLQKGQGVA GRAFLSHNAC FCPDITQFCK 420 TEYPLVHYAR MFGLSGSFAI CLRSSYTGND NYVLEFFWPL SISDNYEQNA LLGSLVATMK 480 QHFQSLKVAS GMDLEEEEGF VEIIQTSMSG RLDLRLECIR IPQSPKSPPN LNTSPKEGKT 540 AQLDPLKHHL MVNLDAVDNG GNISQAEGSH FPTSLPENKG NKKPSERKRG KTEKSISLEV 600 LQQYFAGSLK DAAKSLGVCP TTMKRICRQH GISRWPSRKI NKVNRSLSKL KRVIESVQGA 660 EGAFDLTPLT SPLPVTVGSI SWPSNLNGCN QQNSLNSKSL EPIDEKNGSP ICNAAGNDGQ 720 GGGEAQLLGG RILSREEAVL QNGFSPKIGL VSDRFKAGNA SGEESTGTPT SHGSCQGSPA 780 NDSAPANDSP VSPVHEKCKN AGNTPELAFQ TKGKLNLSAA YSVPDALVAT EAQAPLGEML 840 IKDAGSSKDL RNLCPSVADT ILEERVPESS WTNYPGPDFP TTEAVAALEH AMTQGTTRQE 900 MMTITIKAAY REDIIRFRIS LSSGIVELKE EVAKRLKLEV GTFDIKYLDD DHEWVLIACD 960 ADLQECIDIS RSSGSSIIRL SVHDVNTNLG SSCESNGEL*

Sequence ? help Back to Top

Protein Sequence Length: 1000 aa Download sequence Send to blast

MPEQEDDKSK ENQTVGGDKG ETLMDLDLDL DTSWPLDQIS YLSNPLSPLL LSSSDQPCSP  60
LWAFSDADDD RLLPVSSASH ATTPPLRFSD YPIFLACAPN SVAENHTEND DKRKFPSPLL  120
GLMPFDNPDG YCVIKERMTL ALRKFKESTE QHVLAQVWAP TKNGGRYVLT TSGQPFVIDP  180
HSNGLHQYRM VSLMYMFSVD GDCEGELGLP GRVFRQKLPE WTPNVQYYSS KEYSRRDHAL  240
HYNVQGTLAL PVFEPFGQSC VGVLELIMTS QKINYGPEVN KVCKALEAVN LRSSEILDHP  300
STQICNEGRR NALAEILEIL TVVCETHKLA LAQTWVPCMH RSVLAFDGGL KKSCTSFDGS  360
CNGQVCMSTT DVAFYVVDPH MWGFREACLE HHLQKGQGVA GRAFLSHNAC FCPDITQFCK  420
TEYPLVHYAR MFGLSGSFAI CLRSSYTGND NYVLEFFWPL SISDNYEQNA LLGSLVATMK  480
QHFQSLKVAS GMDLEEEEGF VEIIQTSMSG RLDLRLECIR IPQSPKSPPN LNTSPKEGKT  540
AQLDPLKHHL MVNLDAVDNG GNISQAEGSH FPTSLPENKG NKKPSERKRG KTEKSISLEV  600
LQQYFAGSLK DAAKSLGVCP TTMKRICRQH GISRWPSRKI NKVNRSLSKL KRVIESVQGA  660
EGAFDLTPLT SPLPVTVGSI SWPSNLNGCN QQNSLNSKSL EPIDEKNGSP ICNAAGNDGQ  720
GGGEAQLLGG RILSREEAVL QNGFSPKIGL VSDRFKAGNA SGEESTGTPT SHGSCQGSPA  780
NDSAPANDSP VSPVHEKCKN AGNTPELAFQ TKGKLNLSAA YSVPDALVAT EAQAPLGEML  840
IKDAGSSKDL RNLCPSVADT ILEERVPESS WTNYPGPDFP TTEAVAALEH AMTQGTTRQE  900
MMTITIKAAY REDIIRFRIS LSSGIVELKE EVAKRLKLEV GTFDIKYLDD DHEWVLIACD  960
ADLQECIDIS RSSGSSIIRL SVHDVNTNLG SSCESNGEL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.01G053000.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021628516.1	0.0	protein NLP6-like
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2C9WKC1	0.0	A0A2C9WKC1_MANES; Uncharacterized protein
STRING	cassava4.1_000922m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Manes.01G053000.1.p

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]