PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G047200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 344aa    MW: 38761.6 Da    PI: 6.2305
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G047200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.79.8e-28135195259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs++d ++++itY+g H+++
  Manes.01G047200.1.p 135 DDGYSWRKYGQKDILGAKYPRSYYRCTYRntqNCWATKQVQRSDDDHTIFDITYRGIHTCS 195
                          8***************************98899**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-27127195IPR003657WRKY domain
PROSITE profilePS5081121.184129192IPR003657WRKY domain
SuperFamilySSF1182905.23E-25133196IPR003657WRKY domain
SMARTSM007741.3E-38134196IPR003657WRKY domain
PfamPF031061.4E-25135194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MENSWSWEQK TLVSELIQGM ELAKQLKIHM NTASSVETRD SLVQRILTSY EKSLLILNYS  60
GSMGQQHQHQ HHQLQQNFGA TAGTVPESPI SMNGSPGSDD FDGGHSDISK KRKTMPRWTD  120
QVRVSSENGL EGPHDDGYSW RKYGQKDILG AKYPRSYYRC TYRNTQNCWA TKQVQRSDDD  180
HTIFDITYRG IHTCSHGQQQ IPPPASPEKQ EQKQNIDQQQ QSQAALFNFQ KVLRVNTEDL  240
DNKEMAFPFS FPPTYGSTKT SGTYSQSFTS PATPESNYYS VSPFQMNNYA GVQNLQHHSE  300
SGFTELISAN TSAANSPIVE PDFSLQSLEL DPNFPFNTPG FFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-171361921874Disease resistance protein RRS1
5w3x_D2e-171361921874Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G047200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276140.0KT827614.1 Manihot esculenta WRKY transcription factor 39 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021620136.10.0probable WRKY transcription factor 53
TrEMBLA0A140H8P30.0A0A140H8P3_MANES; WRKY transcription factor 39
STRINGcassava4.1_011106m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.14e-69WRKY family protein
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]