PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G034800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 420aa    MW: 46354.4 Da    PI: 7.3259
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G034800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.8e-16118163147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ed +l+++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
  Manes.01G034800.1.p 118 RGHWRPAEDTKLKELVAHYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 163
                          899*****************************.***********996 PP
2Myb_DNA-binding57.33.5e-18170213146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r ++T+eE+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ 
  Manes.01G034800.1.p 170 RRAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 213
                          678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.325113164IPR017930Myb domain
SMARTSM007176.3E-14117166IPR001005SANT/Myb domain
SuperFamilySSF466892.28E-28118211IPR009057Homeodomain-like
PfamPF002499.5E-16118163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-26119171IPR009057Homeodomain-like
CDDcd001676.64E-13121162No hitNo description
PROSITE profilePS5129427.592165219IPR017930Myb domain
SMARTSM007178.2E-15169217IPR001005SANT/Myb domain
PfamPF002495.6E-15170212IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-21172218IPR009057Homeodomain-like
CDDcd001674.56E-12172212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MANNCVIYST SEKNPNCFSP SSSSSSSGMV LVDIASLSLS PSYGVIPPSS SSSSSSMETG  60
RGSWVFSLMG KGSDCSDVFL ENNDTENHNA NSNDENPNNE NINSGKETDS GQSKLCARGH  120
WRPAEDTKLK ELVAHYGPQN WNLIAEKLEG RSGKSCRLRW FNQLDPRINR RAFTEEEEER  180
LMQAHRLYGN KWAMIARLFP GRTDNAVKNH WHVIMARKYR EQSSAHRRRK LTQSVYRRSE  240
ETSSFLCRDP ATRSEPPPPP PPTYCLNIPN AVGLTNLSPY PVGPFNGGVD YGLNGSRIQL  300
PLTGFCAQQT PFDFFPGPKS NDMIGSIFSH RPADEPHNSS FYPQRHHDTM AMQQSNYQTP  360
YYLSASTPPP PPPPPPPQVS ATEPSPSSSS SSVAENTRTV HFETIPPPPF IDFLGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-341182187107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G034800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346336e-85KM034633.1 Jatropha curcas clone JcMYB012 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021630084.10.0myb-like protein Q
TrEMBLA0A2C9WHH20.0A0A2C9WHH2_MANES; Uncharacterized protein
STRINGcassava4.1_009655m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.14e-76myb domain protein 105