PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G029000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 419aa    MW: 47665.4 Da    PI: 5.7141
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G029000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.57.2e-1258104249
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49 
                          + G+rF+P+d+el+v+yL +k+ g++l++ ++i+e+d+y+++  +Lp 
  Manes.01G029000.1.p  58 ACGYRFSPHDSELIVHYLLRKILGQQLPV-NIIPEIDLYQYDADQLPI 104
                          67***************************.89**************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-1247103IPR003441NAC domain
PfamPF023652.3E-46089IPR003441NAC domain
PfamPF002328.7E-45105311IPR001360Glycoside hydrolase family 1
Gene3DG3DSA:3.20.20.806.2E-74105305IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514456.24E-107105415IPR017853Glycoside hydrolase superfamily
PRINTSPR001316.9E-16109123IPR001360Glycoside hydrolase family 1
Gene3DG3DSA:3.20.20.804.9E-43306416IPR013781Glycoside hydrolase, catalytic domain
PRINTSPR001316.9E-16320328IPR001360Glycoside hydrolase family 1
PRINTSPR001316.9E-16342353IPR001360Glycoside hydrolase family 1
PRINTSPR001316.9E-16364381IPR001360Glycoside hydrolase family 1
PRINTSPR001316.9E-16388400IPR001360Glycoside hydrolase family 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MTGFCNLLIL ALINMVSAVC NNSLDVRITE EEEVEEVTED NQVGSEVWNF KLDELKLACG  60
YRFSPHDSEL IVHYLLRKIL GQQLPVNIIP EIDLYQYDAD QLPINGTRAI NLAGVDHYNK  120
LINALIAADL PQALEDRYNG WFDPQIIKDY ATFAETCFEK FGDSVKHWIT LNEPRTFTIQ  180
GYDVCLQAPG RCSIVLRLLC RAGNSATEPY IVAHNFLLSH GTVADIYKKK YKAKQGGSLG  240
ISFDVMWFEP ASNSTEDIEA TQRAQDFQLG WFIEPLLFGD YPSSMKTRVG NRLPLFSKSE  300
AALIKGLMNY IKNKSGNIPL FITKNGMNDS NTFTSIKDAL KDEKRIKYHN DYLTNLLASI  360
KEDGCNVKGY FVWSLLDNWE WAAGYSSRFG LFFVDYKDKL KRYPKDSVKW FKNFLTST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gno_A1e-15010541799488Os03g0212800 protein
3gnp_A1e-15010541799488Os03g0212800 protein
3gnr_A1e-15010541799488Os03g0212800 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHydrolyzes glycosides, oligosaccharides and hydrophobic glycosides (PubMed:19587102). Possesses gibberellin ester beta-D-glucosidase activity. Can hydrolyze gibberellin A4 beta-D-glucosyl ester in vitro (PubMed:23811195). {ECO:0000269|PubMed:19587102, ECO:0000269|PubMed:23811195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G029000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628014.10.0beta-glucosidase 40
RefseqXP_021628022.10.0beta-glucosidase 40
SwissprotQ8L7J21e-150BGL06_ORYSJ; Beta-glucosidase 6
TrEMBLA0A2C9WHA20.0A0A2C9WHA2_MANES; Uncharacterized protein
STRINGcassava4.1_028433m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.15e-11NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Opassiri R, et al.
    Analysis of rice glycosyl hydrolase family 1 and expression of Os4bglu12 beta-glucosidase.
    BMC Plant Biol., 2006. 6: p. 33
    [PMID:17196101]
  3. Seshadri S,Akiyama T,Opassiri R,Kuaprasert B,Cairns JK
    Structural and enzymatic characterization of Os3BGlu6, a rice beta-glucosidase hydrolyzing hydrophobic glycosides and (1->3)- and (1->2)-linked disaccharides.
    Plant Physiol., 2009. 151(1): p. 47-58
    [PMID:19587102]
  4. Sansenya S,Maneesan J,Cairns JR
    Exchanging a single amino acid residue generates or weakens a +2 cellooligosaccharide binding subsite in rice β-glucosidases.
    Carbohydr. Res., 2012. 351: p. 130-3
    [PMID:22341501]
  5. Hua Y,Sansenya S,Saetang C,Wakuta S,Ketudat Cairns JR
    Enzymatic and structural characterization of hydrolysis of gibberellin A4 glucosyl ester by a rice β-D-glucosidase.
    Arch. Biochem. Biophys., 2013. 537(1): p. 39-48
    [PMID:23811195]