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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G022500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 24351.2 Da PI: 10.0025 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.7 | 1.3e-17 | 52 | 101 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +grWvAeI+d s ++ r +lg+f+taeeAa a++ a++ l+g Manes.01G022500.1.p 52 RYLGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDTAEEAAMAYDSAARLLRG 101 689******.7*********42...36***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.5E-35 | 52 | 115 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.1E-12 | 52 | 101 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.666 | 52 | 109 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.09E-32 | 52 | 109 | No hit | No description |
SuperFamily | SSF54171 | 3.2E-20 | 52 | 110 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.0E-29 | 52 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-8 | 53 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-8 | 75 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MDKKQISKIP SSHQKNQTVS SESLEDRDKR STEDIINKQA RKSSNNGGLM RRYLGVRQRP 60 SGRWVAEIKD SSQKLRLWLG TFDTAEEAAM AYDSAARLLR GRNAKTNFDF HGNSIDTHQE 120 NCRFLGKNPR LYQLFQHAVM KNHARSSSPS AAAGEISNGT PWLDQNFEAM VEEDGSKKLC 180 GLSIGSSKVY SSVIVAPSFS ASSSSSSLLC QGEQNSCKKV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 52 | 108 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G022500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021616327.1 | 1e-164 | ethylene-responsive transcription factor CRF3-like | ||||
TrEMBL | A0A2C9WHG5 | 1e-163 | A0A2C9WHG5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_024529m | 1e-163 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12349 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-18 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G022500.1.p |