PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G011200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 333aa    MW: 37440.9 Da    PI: 6.871
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G011200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1775.1e-5551301128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL++kv++ +++  ++i ++d++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdk
  Manes.01G011200.1.p   5 LPPGFRFHPTDEELITFYLTPKVSDVSFTS-KAIVDADLNKCEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDK 93 
                          79*************************999.88***************988999************************************ PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e+++ +  lvg+kktLvfy+grap+g+kt+Wvmheyrl
  Manes.01G011200.1.p  94 EIFR-GAILVGMKKTLVFYQGRAPRGQKTNWVMHEYRL 130
                          ****.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-643151IPR003441NAC domain
PROSITE profilePS5100559.7295151IPR003441NAC domain
PfamPF023657.4E-296130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT FYLTPKVSDV SFTSKAIVDA DLNKCEPWDL PGKASMGEKE  60
WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRGAI LVGMKKTLVF YQGRAPRGQK  120
TNWVMHEYRL QNKHPFKPTK EEWVVCRVFQ KSSEATKNPQ QTESSQQSLE SPCDTNSIVN  180
EFGDIELPNI NNIVNSSNGF NTFLTQSSCN NETNVNMNMN LHNWAATREQ QPSLSWPSSL  240
LSSNLTMNAL LLKALQMRNY HQREAAAAAA AAVAPSSSDH YSFLTQGSII SQFGADLSSN  300
FHGCSSSSSS KVLETLPQPL QQEQPFNLDS IW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-54415716171NO APICAL MERISTEM PROTEIN
1ut4_B2e-54415716171NO APICAL MERISTEM PROTEIN
1ut7_A2e-54415716171NO APICAL MERISTEM PROTEIN
1ut7_B2e-54415716171NO APICAL MERISTEM PROTEIN
4dul_A2e-54415716171NAC domain-containing protein 19
4dul_B2e-54415716171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G011200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6052070.0KR605207.1 Manihot esculenta NAC transcription factors 69 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618823.10.0NAC domain-containing protein 100-like
TrEMBLA0A0M4G3R40.0A0A0M4G3R4_MANES; NAC transcription factors 69
STRINGcassava4.1_027587m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49463356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-104NAC domain containing protein 58
Publications ? help Back to Top
  1. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]