PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Manes.01G006900.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C2H2

Protein Properties

Length: 280aa MW: 31291 Da PI: 7.7172

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.01G006900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	168	190	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F + L H +H Manes.01G006900.1.p 168 YVCKECNKVFDDFRALGGHTASH 190 9*********9988887777666 PP
2	zf-C2H2	11.2	0.0012	229	251	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H + H Manes.01G006900.1.p 229 YECGMCSRRFSTGQALGGHKSYH 251 99**********99998888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.5E-6	168	190	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.99E-8	168	190	No hit	No description
SMART	SM00355	0.11	168	190	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.658	168	195	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	170	190	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.99E-8	224	251	No hit	No description
Pfam	PF13912	2.2E-8	228	253	IPR007087	Zinc finger, C2H2
SMART	SM00355	2	229	251	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.494	229	251	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	231	251	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
YYDQDRHQEQ YHHQDDGDQE HPKETTHSEA TVINLIDSLN AGSWSTTRKR TFCFCDSSCL 60 NHVNQKILER IPTMILLKSM GFAEKNISDV LRDMGNEKMK QNIEETVQQW CSTNNSDTIS 120 EEPAATPTDR RKKRCTDMGV LKKSMKKKKK MDIKLKSLSE LVDSKGSYVC KECNKVFDDF 180 RALGGHTASH NRNKKAENAP SEELGTGGGD LDRGSSLAEL AVDNKGKRYE CGMCSRRFST 240 GQALGGHKSY HRKTACGEVQ EVSGEGTVPA KDADLKFEI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	149	KKRCTDMGVLKKSMKKKKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.01G006900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021632174.1	0.0	uncharacterized protein LOC110629491
TrEMBL	A0A2C9WGH3	0.0	A0A2C9WGH3_MANES; Uncharacterized protein (Fragment)
STRING	cassava4.1_028217m	1e-149	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18825	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	7e-15	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Manes.01G006900.1.p