PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G001900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 774aa    MW: 84903.2 Da    PI: 5.1531
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G001900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.89.8e-3188172187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW++qe+laL+++r++m+ ++r++  k+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f+qlea
  Manes.01G001900.1.p  88 RWPRQETLALLQIRSDMDAAFRDATVKGPLWEDVSRKLAEMGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFSQLEA 172
                          8*********************************************************************866665..*******85 PP
2trihelix1041.1e-32490575187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+k evlaLi++r+ +e+r+++   k+plWee+s+ m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a
  Manes.01G001900.1.p 490 RWPKAEVLALIKLRSGLESRYQEVGPKGPLWEEISAGMHRMGYKRNAKRCKEKWENINKYFKKVKESDKKR-PEDAKTCPYFHELDA 575
                          8*********************************************************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.01185147IPR001005SANT/Myb domain
CDDcd122036.68E-2887152No hitNo description
PROSITE profilePS500906.56287145IPR017877Myb-like domain
PfamPF138375.6E-2187173No hitNo description
SMARTSM007170.14487549IPR001005SANT/Myb domain
PROSITE profilePS500906.655489547IPR017877Myb-like domain
PfamPF138376.3E-23489576No hitNo description
CDDcd122031.44E-31489554No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MQQGGIPIQS QYGAPPTASA TGALSTHMLL AAGTDQSQQH QQQQLIVEEA SPISSRPPAT  60
TGNLDEFMRL SGSGDEADRA EGISSSNRWP RQETLALLQI RSDMDAAFRD ATVKGPLWED  120
VSRKLAEMGY KRSAKKCKEK FENVHKYYKR TKEGRAGRQD GKSYRFFSQL EALHNINSNT  180
STTSLNLVSA SQPVATTATT LDVAPVSVGI PMPVSSVRIP PSTVGMSSSS SMFPPDLAAT  240
MAPAVPVPPR PLAGISFSST SDGSSSSSGS HEDDEDDDDD DDDVDKPTSV AAGSSRKRKR  300
HSSKGGTRRM MEFFEGLMKH VIQKQEAMQQ SFLEAIEKRE HDRMIREEAW KRQELARQSR  360
ENELVAQERA IYASRDAAII AFLQKITGQT IQLPSPVTIP AVPRPAPPSQ PQTVSLAPVV  420
TVSTQQPPPP QPQAQPDRSP LPQQDKQQQH QVVHHQQSSI SSEVAVAFPE QEVPPQEIGN  480
IGSLEPTSSR WPKAEVLALI KLRSGLESRY QEVGPKGPLW EEISAGMHRM GYKRNAKRCK  540
EKWENINKYF KKVKESDKKR PEDAKTCPYF HELDALYRKK ILGSSSGGAG DGSTTSSSFA  600
NLNRPPESQQ QASMISDPLP PTKPESRSEV SATVLVQASD SQTKMGSGAD INTVLPGSLF  660
GEGNGGATKP EDIVKEFIKL QGMQRQQQIQ LMLHDYEKME EGNESDNTEQ EDNEDGMEDV  720
DCNDNDEDED GVEDDDERQE ERKMAYKIEF QRQNTNASNG GGNGTPSFLA VVQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138KRSAKKCKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G001900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624849.10.0trihelix transcription factor GTL1 isoform X1
TrEMBLA0A2C9WGU40.0A0A2C9WGU4_MANES; Uncharacterized protein
STRINGcassava4.1_002081m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.16e-53GT-2-like 1