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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
MLOC_7940.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family |
RAV |
Protein Properties |
Length: 357aa MW: 38814.6 Da PI: 9.8552 |
Description |
RAV family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MLOC_7940.1 | genome | IBSC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 38.5 | 2.8e-12 | 61 | 109 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s++kGV + +grW A+I++ r +r++lg+f ++ Aa+a++ a+++++g
MLOC_7940.1 61 SRFKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEDSAARAYDVAALRYRG 109
689***9788.8*********......44**********99*************98 PP
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2 | B3 | 94.8 | 5.9e-30 | 175 | 270 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
f+k+ tpsdv+k++rlv+pk++ae+h + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD++vF+ +
MLOC_7940.1 175 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrtpetTTTTGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLGAGDSIVFSCSAY 270
89*************************9987776644455999************************************************96543 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MGVEILSSTG EHSSQYSSGA ASTATTESGV GGRPPTAPSL PVSIADESAT SRSASAQSTS 60 SRFKGVVPQP NGRWGAQIYE RHARVWLGTF PDEDSAARAY DVAALRYRGR EAATNFPCAA 120 AEAELAFLAA HSKAEIVDML RKHTYTDELR QGLRRGRGMG ARAQPTPSWA REPLFEKAVT 180 PSDVGKLNRL VVPKQHAEKH FPLKRTPETT TTTGKGVLLN FEDGEGKVWR FRYSYWNSSQ 240 SYVLTKGWSR FVREKGLGAG DSIVFSCSAY GQEKQFFIDC KKNKTMTSCP ADDRGAATAS 300 PPVSEPTKGE QVRVVRLFGV DIAGEKRGRA APVEQELFKR QCVAHSQHSP ALGAFVL
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK372082 | 0.0 | AK372082.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2146E06. |