 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
MLOC_79356.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
| Family |
SRS |
| Protein Properties |
Length: 184aa MW: 19280 Da PI: 9.8823 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MLOC_79356.2 | genome | IBSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 115.8 | 6.2e-36 | 96 | 162 | 2 | 68 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaa 68
++gt+sCqdCGnqakkdC h+RCRtCCksrgfdCathvkstWvpaa+rrer++q+ +as+++ ++ +
MLOC_79356.2 96 GAGTISCQDCGNQAKKDCPHMRCRTCCKSRGFDCATHVKSTWVPAARRRERHHQQPQASAEQFKRPR 162
5789***********************************************8888777665544332 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 184 aa
Download sequence Send
to blast |
MAGFPLGGGG HHSRGARDDD GSHPPGINPS ASSSSAAAFL YATTPSRGGF QLWQGQPQHE 60
QQQHPFYGGP SSSIIRFADD PAASGSSSRG GGRGSGAGTI SCQDCGNQAK KDCPHMRCRT 120
CCKSRGFDCA THVKSTWVPA ARRRERHHQQ PQASAEQFKR PREGGQPSST TPTTTSSGGS 180
ISSR
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK241285 | 4e-50 | AK241285.1 Oryza sativa Japonica Group cDNA, clone: J065137A19, full insert sequence. |
| GenBank | AP005314 | 4e-50 | AP005314.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0515E01. |
| GenBank | AP005567 | 4e-50 | AP005567.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1254_E07. |
| GenBank | AP014965 | 4e-50 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012617 | 4e-50 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
