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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_7925.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | WOX | ||||||||
Protein Properties | Length: 170aa MW: 19109.5 Da PI: 11.6651 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 50.5 | 3.5e-16 | 68 | 128 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++ +eq+++Le+lF++ +p+++e+ ++ ++l + +++V++WFqNr+ + k+ MLOC_7925.1 68 KPRWNPRPEQIRVLETLFNSgLINPTRDEIPRIRMRLqeygPVGDSNVFYWFQNRKSRSKN 128 89*****************99****************99999****************995 PP | |||||||
2 | Wus_type_Homeobox | 105.5 | 3.3e-34 | 67 | 129 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi++Le+l++sGl +P+++ei ri+++L+eyG ++d NVfyWFQNrk+R+++k MLOC_7925.1 67 TKPRWNPRPEQIRVLETLFNSGLINPTRDEIPRIRMRLQEYGPVGDSNVFYWFQNRKSRSKNK 129 689**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-7 | 55 | 128 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.34E-11 | 64 | 132 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.495 | 64 | 129 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-5 | 66 | 133 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.76E-4 | 68 | 129 | No hit | No description |
Pfam | PF00046 | 1.1E-13 | 68 | 127 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MASPNSRQQQ QHWPSMFRSK HGSQVWQSQP DMTGSPPSLV SGSAAAAGHS FKSPFSSGPD 60 QERNTDTKPR WNPRPEQIRV LETLFNSGLI NPTRDEIPRI RMRLQEYGPV GDSNVFYWFQ 120 NRKSRSKNKL RNAAARAAPV RACAPARQHA AAPYTPPPKQ FHPPKPPLFS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_7925.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-153 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159266.1 | 1e-98 | WUSCHEL-related homeobox 7-like | ||||
Swissprot | Q0JKK6 | 5e-48 | WOX7_ORYSJ; WUSCHEL-related homeobox 7 | ||||
TrEMBL | A0A287L9L2 | 1e-120 | A0A287L9L2_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287L9L4 | 1e-121 | A0A287L9L4_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287L9N8 | 1e-121 | A0A287L9N8_HORVV; Uncharacterized protein | ||||
STRING | MLOC_7925.1 | 1e-122 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2666 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 2e-41 | homeobox-3 |