PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_7883.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 487aa    MW: 51303.1 Da    PI: 6.6261
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_7883.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.61.7e-16319365455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  MLOC_7883.1 319 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKTLQ 365
                  6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-21312374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.165315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.79E-17318369No hitNo description
PfamPF000106.5E-14319365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-21319373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-17321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MSQFVPDWGN MGDISRPLGE DDDLMELLWC NGNVVMQSQG HRKLPPRPEK VPAPAVVQED  60
EAGLWFPFAL ADSLDKDIFT DLFCEEPPGA AVVDGAGKAG RGDGAPLLGD VDGRSSQSSA  120
VSAASDLMPP PKSTHTHVSC SSRQQSMSLA DCGDNAGGVV SGLVQARAGK AAMEEGASST  180
LSAIGASFCG SNQVQVQGAV SEQGRAGHTT VYGGRGAGSA LPSAVGSGNA NASGRGHEAT  240
VASSSGRSNY CFGAAATTTT TTTGTEPTST SNRSSKRKRG LDTEDSESPS EDAESESLAL  300
DRKPPQKLTT EGRSRAAEVH NLSERRRRDR INEKMRALQE LIPHCNKTDK ASMLDEAIEY  360
LKTLQMQVQM MWMGGGMAAP PAGMFPGMHQ YLPQMGPASM ARMPFMAPQQ QGSLPEQYAH  420
FLGVNHHHLQ PPAHHHHHQH FAQGVGYYPL GPKALQQSPA LHHVPNGSGT PAATANTAPG  480
NAIHPNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323328ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_7883.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3621620.0AK362162.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2002P11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181205.10.0transcription factor PIF1-like
TrEMBLF2DE450.0F2DE45_HORVV; Predicted protein
STRINGMLOC_7883.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-25phytochrome interacting factor 3