PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_78149.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TALE
Protein Properties Length: 546aa    MW: 58299.2 Da    PI: 5.7364
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_78149.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.64.2e-083153521954
                   HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   Fe   ++yp+ +e+  LA++ gL+  qV++WF N R +
  MLOC_78149.3 315 FEHflHPYPKDSEKVMLARQAGLSRGQVSNWFINARVR 352
                   554459******************************88 PP
2BELL582.4e-19220264145
          BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgs 45 
                   erq+lq+k + L+ +l++Vd+rY++y++q+q+v+ssF+av g g+
  MLOC_78149.3 220 ERQDLQNKVTALMAMLDQVDRRYRHYHQQMQMVVSSFDAVDGSGA 264
                   799***************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.4E-21152283IPR006563POX domain
PfamPF075261.2E-31158265IPR006563POX domain
PROSITE profilePS5007111.839293356IPR001356Homeobox domain
CDDcd000862.71E-11296357No hitNo description
SMARTSM003896.2E-8296360IPR001356Homeobox domain
SuperFamilySSF466892.69E-16297363IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-26299362IPR009057Homeodomain-like
PfamPF059202.3E-16313352IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MATFFSASND QRGLAGGGGG GADMSFHHHY PMSNQYPDSS TGGLIPLPAS IVQQSHIAHG  60
GGGDGGDDEQ AAFMNSRDGA EIGGLQTQML MGDGGASAGQ RSHQGGLSLS LGSQVPVSLY  120
QYGRPGGMTA AASPSLMSPN QSAMAMAASR NAQVNVYVQN SRFLKAAREL LDEVVSVRDA  180
IKRKGDRKDD SAGNGECGKV EGDKGDENEG SSTAELSPAE RQDLQNKVTA LMAMLDQVDR  240
RYRHYHQQMQ MVVSSFDAVD GSGAGGLSRL RYIDQHLRQQ RAMQQFGMMQ QPQHAWRPQR  300
GLPESAVSVL RAWLFEHFLH PYPKDSEKVM LARQAGLSRG QVSNWFINAR VRLWKPMVEE  360
MYKEEFGAEM DSTNSSSENA GNNKHGKVDE AACSEDQDRD EFQSTSAHAG ASQLLIAYKS  420
EPVASMDAGP LSSLGGGDMG TTYAPGGLSL NHHGPGGGSL LQDAFAHHGD DARFVGYGGN  480
MGDLGGSVSL TLGLQHCNNN SNAGHVPPEQ QGLLYGNPGD FDFLNGADDR QRFASSSSQL  540
LHDFVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A9e-17302360159Homeobox protein Meis2
5bng_B9e-17302360159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_78149.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3675790.0AK367579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2059B17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165933.10.0BEL1-like homeodomain protein 7
TrEMBLF2DUL10.0F2DUL1_HORVV; Predicted protein
STRINGMLOC_78149.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.15e-87BEL1-like homeodomain 7