 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
MLOC_7814.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
| Family |
CO-like |
| Protein Properties |
Length: 432aa MW: 47310.3 Da PI: 5.1958 |
| Description |
CO-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MLOC_7814.1 | genome | IBSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 25.3 | 3.3e-08 | 18 | 61 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+r C+ + + +++++C ++ +lC+ C ++ H+ H++v
MLOC_7814.1 18 ARACDGCLRRRARWYCAADDAFLCQGCDTSVHSAnplarrHERV 61
578*****************************667888888876 PP
|
| 2 | CCT | 67.6 | 3.4e-23 | 372 | 415 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
MLOC_7814.1 372 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 415
9*****************************************86 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 432 aa
Download sequence Send
to blast |
MSCSGKAAAD GAMGSKAARA CDGCLRRRAR WYCAADDAFL CQGCDTSVHS ANPLARRHER 60
VRLRPTSPLA PRERRRGDEV VPAWFKRKAR TPRSQAKGVG RLLSRRLVVP ESSGGESPEE 120
HKCDVETDEE ELLYRVPIFD PALAELCSPL SLEEATAAVA SCCNEDGVVL ENPTKPTTAM 180
PSPAAVEFFP DSLVNLGPTD AELMEFAADM EALLGRPGMD DGNEEEPFCM EALGLIEPMD 240
VEGGRVKLEI DPMRACGLEQ KPEVSGDMFD IDFDYHYDSP QGTPDENAGS SGASADAQFT 300
PRSLALNLNY DAIMENWGSS PWADDERPNV KLDDCWPHDY YSLHEGAWMM GGVVGHGGEG 360
LGTPRPRMDG GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRANGAGG 420
GVPVAIATAC VA
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 382 | 398 | RRTRLFSKKIRYEVRKL |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK370304 | 0.0 | AK370304.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2108I12. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT1G25440.1 | 1e-70 | B-box type zinc finger protein with CCT domain |
