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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_77763.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | AP2 | ||||||||
Protein Properties | Length: 265aa MW: 29125.6 Da PI: 9.5032 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.6 | 3.1e-13 | 28 | 78 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+ + eAa+a+++a+ k +g MLOC_77763.7 28 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 78 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.66E-25 | 28 | 88 | No hit | No description |
Pfam | PF00847 | 2.3E-8 | 28 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-17 | 28 | 87 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 15.277 | 29 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-16 | 29 | 86 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-31 | 29 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-6 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-6 | 68 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MKQMKGLSKE EFVHVLRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKYIYLGLFD 60 NEVEAARAYD KAAIKCNGRE AVTNFEPSTY DAELLNEAAA EGADVDLNLS ISQPTSQSPK 120 RDKSTLGLQL HHGSYEGSEL KRPKVDAPPE MVAIPHRYPV LTEHPPIWHG QSYPLFLNNE 180 DAARDHSRRP EVATGGVPTW AWRVSHPPPT QPMPLFSSSS SAAASSGFSK TAAAAAPAAP 240 SASFRFDPMA PSSSSSNQHH HHHPR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_77763.7 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370055 | 0.0 | AK370055.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2104F07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020170161.1 | 1e-165 | floral homeotic protein APETALA 2-like isoform X1 | ||||
Swissprot | B8AXC3 | 1e-113 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | A0A287EN07 | 0.0 | A0A287EN07_HORVV; Uncharacterized protein | ||||
TrEMBL | M0Z696 | 0.0 | M0Z696_HORVV; Uncharacterized protein | ||||
STRING | MLOC_77763.7 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10083 | 29 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-59 | related to AP2.7 |