PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_77438.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 703aa    MW: 76028.9 Da    PI: 8.7215
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_77438.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23123224199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g  W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   + +++
  MLOC_77438.2 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldyaADPPVQ--TVIAKDVHGTAWKFRHIYRGTPRRHLLTTGWSAFVNRKKLVAGDSIVFL--RGDGG 215
                   89*****************************96555555..8************************************************..34889 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                    l+v+++r+
  MLOC_77438.2 216 DLHVGIRRA 224
                   99*****97 PP
2Auxin_resp112.63.7e-37269352183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                   aa+ a ++++FevvY Prast+eF+v+++ v++a++v++++GmRfkmafetedss++++ +Gtv+gv+ ++p+rWp+S+Wr+L+
  MLOC_77438.2 269 AARLAGSGQPFEVVYFPRASTPEFCVRAAAVRAAMRVQWCPGMRFKMAFETEDSSRISWfMGTVAGVQVAHPTRWPQSPWRLLQ 352
                   6778899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-37117226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-29117236IPR015300DNA-binding pseudobarrel domain
CDDcd100172.27E-22122223No hitNo description
PROSITE profilePS5086312.619123225IPR003340B3 DNA binding domain
PfamPF023623.3E-21123224IPR003340B3 DNA binding domain
SMARTSM010193.6E-20123225IPR003340B3 DNA binding domain
PfamPF065071.8E-31269352IPR010525Auxin response factor
PROSITE profilePS5174512.267609687IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MITFADLTEP PPGAERRVDR QLWLACAGGM CTVPPVGCSV YYFPQGHAEH ALGLDAGADL  60
SAARVPALVP CRVAAVLYMA DTHTDEVFAR ILLAPLGDTD ADGNVQDDAA VAADGEQEKP  120
ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYAADPPV QTVIAKDVHG TAWKFRHIYR  180
GTPRRHLLTT GWSAFVNRKK LVAGDSIVFL RGDGGDLHVG IRRAKRGFRG AEEGSLSLTG  240
WGRYYSGPMR GNASPCTRGK VRAEDVVEAA RLAGSGQPFE VVYFPRASTP EFCVRAAAVR  300
AAMRVQWCPG MRFKMAFETE DSSRISWFMG TVAGVQVAHP TRWPQSPWRL LQVTWDEPDL  360
LQNVKRVSPW LVEIVSSMPA MHLASFSPPR KKSRIPAYPE FPFEGQLLYP SFPLNPMAHG  420
NRRHHRHTGS YHPSLSPFPD CSAPSGIQGA RHSQFGPFLS DLHLTHLQSR LMYPGLRCHD  480
HVSPAPAPIA SRISTDLTIG SSPARNGVSS TMPASAKRPN DAKPPGLVLF GRTILTEQQM  540
SRSNSAGVVS SPAAAGNSSL NWNTDKAGNA SPGSGSTVVQ NSGSTDNMSP ERPRRCRDNS  600
HISELGLKPG QCKVFVESDT VGRNLDCSAM SSFEELYGRL SETFCIDGAE LRSRVLYRGA  660
AGEVKHAGDE PFSEFIKSAR RLTIVTYAGS NNTGSLSAAA TNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-751837751392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_77438.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164996.10.0auxin response factor 8-like
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLA0A287UB960.0A0A287UB96_HORVV; Auxin response factor
STRINGMLOC_77438.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16